PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g002520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 401aa MW: 42398.6 Da PI: 9.3651

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g002520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.1e-38	91	150	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+++ Csa20g002520.1 91 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRTK 150 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-39	74	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-32	93	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MVFSSFPTYP DSSNWQQQHQ PITTTVGFTG NNINQQFLPH HPLPPQQQQT PPQLHHNNGN 60 GGAGGPGGPG GLIRPGSMAE RARLANIPLP ETALKCPRCD STNTKFCYFN NYSLTQPRHF 120 CKSCRRYWTR GGALRSVPVG GGCRRNKRTK NSSGGGGGSS SSGNSKSQDS TTSNEQYHHR 180 AMANNQMGPP SSSSSLSSLL SSYNAGLIPG HDHNNNNILG LGSSLPPLKL MPPLDFTDNF 240 TLQYGAVSAP SYHIGGGSSG GSGGAAALLT GFDQWRFPAT NQLPLGGLDP FDHQQQMEQQ 300 NPGYGLVTGS GQYRPKNIFH NLISSSSSAS SAMVTATASQ LASVKMEDSN NQLNLSRQLF 360 GNEQQLWNIH GAAAASTAAA ATSSWSDVSN NFSSSSTSNI *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MVFSSFPTYP DSSNWQQQHQ PITTTVGFTG NNINQQFLPH HPLPPQQQQT PPQLHHNNGN  60
GGAGGPGGPG GLIRPGSMAE RARLANIPLP ETALKCPRCD STNTKFCYFN NYSLTQPRHF  120
CKSCRRYWTR GGALRSVPVG GGCRRNKRTK NSSGGGGGSS SSGNSKSQDS TTSNEQYHHR  180
AMANNQMGPP SSSSSLSSLL SSYNAGLIPG HDHNNNNILG LGSSLPPLKL MPPLDFTDNF  240
TLQYGAVSAP SYHIGGGSSG GSGGAAALLT GFDQWRFPAT NQLPLGGLDP FDHQQQMEQQ  300
NPGYGLVTGS GQYRPKNIFH NLISSSSSAS SAMVTATASQ LASVKMEDSN NQLNLSRQLF  360
GNEQQLWNIH GAAAASTAAA ATSSWSDVSN NFSSSSTSNI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g002520.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493731	0.0	AB493731.1 Arabidopsis thaliana At5g02460 mRNA for hypothetical protein, partial cds, clone: RAAt5g02460.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010490710.1	0.0	PREDICTED: dof zinc finger protein DOF5.1
Swissprot	Q9LZ56	0.0	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	R0H7D7	0.0	R0H7D7_9BRAS; Uncharacterized protein
STRING	XP_010490710.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-164	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]