PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g001100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 266aa    MW: 30566.4 Da    PI: 6.58
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g001100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.5e-23111171259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg+ WrKYGqK++k+s++ rsYY+C+++   +C++kk+v++ +++p +  +tY g+H+++
  Csa20g001100.1 111 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQKIQHNPPLYSTTYFGHHTCQ 171
                     6**************************988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-24102171IPR003657WRKY domain
PROSITE profilePS5081120.105105173IPR003657WRKY domain
SuperFamilySSF1182901.57E-22106172IPR003657WRKY domain
SMARTSM007741.4E-33110172IPR003657WRKY domain
PfamPF031069.4E-23112171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNSCQQKAME KLLHGRGCAN QLLVMDHTES DSSMEREDLA KSVLHCFSDA LSILIDTNHE  60
HQDDQSNNSS PQDSSPVLES ARKPLHKRGR KTSVAESSDY HRHESSTPIY HDGFLWRKYG  120
QKQIKESDHQ RSYYKCAYTK DQNCEAKKQV QKIQHNPPLY STTYFGHHTC QLHQAYATFP  180
IDTSDPEDHE GSHMIRFGHP NTSFSSSTNS LYQHQNQNQN HIKDVHMTPE KAEEWSPSQW  240
MSSEVAHAVE AFEFNPFWTS HDFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141121711069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g001100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937300.0AB493730.1 Arabidopsis thaliana At5g01900 mRNA for hypothetical protein, partial cds, clone: RAAt5g01900.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490495.10.0PREDICTED: probable WRKY transcription factor 62
SwissprotQ9LZV61e-175WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLR0ET481e-179R0ET48_9BRAS; Uncharacterized protein
STRINGXP_010490495.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-164WRKY DNA-binding protein 62