PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20426s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 72aa    MW: 8338.65 Da    PI: 11.1567
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20426s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.67.3e-401471360
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                    e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+
  Csa20426s010.1 14 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKR 71
                    6789****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-36171IPR003851Zinc finger, Dof-type
PfamPF027015.8E-341571IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2361771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MVERARIAKV PLPEAALNCP RCDSTNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV  60
PVGGGFRRNK RS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20426s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936533e-98AB493653.1 Arabidopsis thaliana At3g55370 mRNA for hypothetical protein, partial cds, clone: RAAt3g55370.
GenBankAF1558183e-98AF155818.1 Arabidopsis thaliana zinc finger protein OBP3 mRNA, complete cds.
GenBankAK2214023e-98AK221402.1 Arabidopsis thaliana mRNA for zinc finger protein OBP3, complete cds, clone: RAFL25-48-C17.
GenBankAL1329753e-98AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16.
GenBankBT0330283e-98BT033028.1 Arabidopsis thaliana unknown protein (At3g55370) mRNA, complete cds.
GenBankCP0026863e-98CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291398.11e-47dof zinc finger protein DOF3.6 isoform X1
SwissprotQ9M2U14e-48DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLR0FQ933e-46R0FQ93_9BRAS; Uncharacterized protein
STRINGXP_006291398.15e-47(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-50OBF-binding protein 3