PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20097s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 87aa MW: 9655.16 Da PI: 6.8256 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 49.5 | 8e-16 | 2 | 85 | 189 | 276 |
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklp 276 l+++++r+ +gE ++V ++ +++r l s ++++++ ++++sPkvvv+v++e ++ +s+sF ++f++ale+y+++++sl+a +p Csa20097s010.1 2 LSFKAIRFVEGERTIVLISPAIFRRL-------SGISDFVNNLRRVSPKVVVFVDSEgwTEIaGSGSFRREFVSALEFYTMVLESLDAAAP 85 78899********************9.......33557*******************76677899*********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.148 | 1 | 87 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-13 | 2 | 85 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MLSFKAIRFV EGERTIVLIS PAIFRRLSGI SDFVNNLRRV SPKVVVFVDS EGWTEIAGSG 60 SFRREFVSAL EFYTMVLESL DAAAPPG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20097s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118497 | 3e-89 | AK118497.1 Arabidopsis thaliana At4g36710 mRNA for ap2 SCARECROW-like protein, complete cds, clone: RAFL19-73-D11. | |||
GenBank | AK229637 | 3e-89 | AK229637.1 Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL19-66-B20. | |||
GenBank | AL161589 | 3e-89 | AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85. | |||
GenBank | BT011807 | 3e-89 | BT011807.1 Arabidopsis thaliana At4g36710 mRNA sequence. | |||
GenBank | CP002687 | 3e-89 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99708 | 3e-89 | Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437312.1 | 3e-52 | PREDICTED: scarecrow-like protein 15 isoform X2 | ||||
Refseq | XP_010437313.1 | 3e-52 | PREDICTED: scarecrow-like protein 15 isoform X3 | ||||
Refseq | XP_010446750.1 | 3e-52 | PREDICTED: scarecrow-like protein 15 isoform X1 | ||||
Swissprot | O23210 | 2e-52 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
TrEMBL | A0A1J3GXM9 | 2e-52 | A0A1J3GXM9_NOCCA; Scarecrow-like protein 15 (Fragment) | ||||
STRING | XP_010437312.1 | 1e-51 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 9e-55 | GRAS family protein |
Publications ? help Back to Top | |||
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