PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g057970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 208aa MW: 22740.7 Da PI: 7.2149 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.9 | 7.9e-20 | 94 | 128 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C tt+TplWR+gp g+k+LCnaCG++++k+++ Csa19g057970.1 94 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.2E-20 | 88 | 140 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.9E-13 | 88 | 129 | No hit | No description |
PROSITE profile | PS50114 | 13.455 | 88 | 124 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-16 | 92 | 128 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.21E-13 | 93 | 125 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 94 | 119 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-17 | 94 | 128 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MMGYQTNPSF SMFFSSENDD QNQYNYDPYN DLSSSTSVDC TLSLGTPSTR LDDHRRFSSA 60 GSNNISGDFY FHGGNAKTAS YKKGGGDHSL PRRCASCDTT STPLWRNGPK GPKSLCNACG 120 IRFKKEERRA TARNLTIAGG GSSAAEIPVE NPYNGGGSYY SHHHHYASSS PSWAHQNTQR 180 VPYLLPAPEM EYPYVEDASA ASFMSWN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g057970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029505 | 0.0 | BT029505.1 Arabidopsis thaliana At2g18380 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489544.1 | 1e-154 | PREDICTED: GATA transcription factor 20-like | ||||
Swissprot | Q9ZPX0 | 1e-123 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | D7LBB6 | 1e-136 | D7LBB6_ARALL; Predicted protein | ||||
STRING | XP_010489544.1 | 1e-154 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6159 | 17 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-120 | GATA transcription factor 20 |
Publications ? help Back to Top | |||
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