PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g057940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 206aa MW: 22428.1 Da PI: 8.9921 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.6 | 1.1e-31 | 77 | 131 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k+rY+eC+kNhAas Ggh+vDGCgEfm+s geegtaa+l CaAC+CHR+FHR+e + Csa19g057940.1 77 KARYRECQKNHAASSGGHVVDGCGEFMSS-GEEGTAASLLCAACDCHRSFHRKEID 131 689*************************9.999********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-39 | 65 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.3E-29 | 78 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.7E-30 | 79 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.592 | 80 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MEVREKKDEK IEMVRSKPSV LDHHRLPPYA YPQTADKDKP TTKRNGSDPD PDLDTNPISI 60 APAPRSYARP QTTSPGKARY RECQKNHAAS SGGHVVDGCG EFMSSGEEGT AASLLCAACD 120 CHRSFHRKEI DGLFVVNFNS FGHSQRPLVG RHVSPIMMSF GGGGGGGGPA ESSTEDLNKF 180 HQSFSGNGVD QFHQFQPKKR KKTMK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 201 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g057940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006439 | 0.0 | AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence. | |||
GenBank | AY088255 | 0.0 | AY088255.1 Arabidopsis thaliana clone 4845 mRNA, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489539.1 | 1e-150 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 1e-122 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | R0GAP2 | 1e-127 | R0GAP2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010489539.1 | 1e-149 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6515 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-120 | homeobox protein 24 |