PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g057710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SRS
Protein Properties Length: 366aa    MW: 40935.1 Da    PI: 8.3617
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g057710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702106.73.9e-3361162284
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...................aeaaskrkre 77 
                     rs t+sCqdCGnqakk+C+h RCRtCCks+g+dC thv+stW+p+akrrerqq+ ++++s+  ++                    +++ s r++e
  Csa19g057710.1  61 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLDCPTHVRSTWIPIAKRRERQQKIQTPTSNPITDGdrvgnipnpyreidqpatfNSSGSSRNNE 155
                     56789*****************************************************9999887766676777777666666553333333333 PP

          DUF702  78 lkskkqs 84 
                     + +++++
  Csa19g057710.1 156 EDNQQKA 162
                     3222222 PP
2DUF702190.27.7e-592053502154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssa 94 
                     rs t+sCqdCGnqakk+C+h RCRtCCks+g+dC thv+stW+p+akrrerqq+ ++++s+  ++     + ++  re  +++ ++ +s+ l   
  Csa19g057710.1 205 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLDCPTHVRSTWIPIAKRRERQQKIQTPTSNPITDGdrVGNIPNPYRE--IDQPATFNSSGL--- 294
                     56789****************************************************999998765212222222332..355555555554... PP

          DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         e+  +++P+ev s+a+frcvr+s+ +dg+ ++aYqt+v i+Gh fkGiLy+qG+++
  Csa19g057710.1 295 ----EMGNATFPDEVTSNALFRCVRMSGTNDGDCQYAYQTTVGIAGHQFKGILYNQGPDK 350
                     ....555667************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.7E-2864134IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.6E-2666108IPR006510Zinc finger, lateral root primordium type 1
PfamPF051423.2E-54208349IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.6E-26210252IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.9E-26301348IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAGIGSSRNN EEDNQQKANW VWYRNTNNTS TSHHTNQIWQ HPSLDLYPGQ INVCDLTTSS  60
RSLTISCQDC GNQAKKGCTH GRCRTCCKSH GLDCPTHVRS TWIPIAKRRE RQQKIQTPTS  120
NPITDGDRVG NIPNPYREID QPATFNSSGS SRNNEEDNQQ KANWVWYRNT NNTSTSHHTN  180
QIWQHPSLDL YPGQINVCDL TTSSRSLTIS CQDCGNQAKK GCTHGRCRTC CKSHGLDCPT  240
HVRSTWIPIA KRRERQQKIQ TPTSNPITDG DRVGNIPNPY REIDQPATFN SSGLEMGNAT  300
FPDEVTSNAL FRCVRMSGTN DGDCQYAYQT TVGIAGHQFK GILYNQGPDK TITPGTQFYE  360
NPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g057710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072121e-132AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence.
GenBankCP0026851e-132CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467617.11e-152PREDICTED: protein SHI RELATED SEQUENCE 4-like isoform X1
SwissprotQ9SI191e-121SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBLD7LB821e-120D7LB82_ARALL; Uncharacterized protein
STRINGXP_010489509.11e-160(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151171519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.11e-118SHI-related sequence 4