PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g053930.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 1297aa MW: 142668 Da PI: 5.4557

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g053930.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.6	5.1e-28	614	664	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Csa19g053930.1 614 EKTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 664 799**********************************************97 PP
2	RWP-RK	87.1	1.5e-27	927	977	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +i le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Csa19g053930.1 927 ERTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 977 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	603	684	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-25	617	664	IPR003035	RWP-RK domain
PROSITE profile	PS51519	16.961	916	997	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-25	930	977	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.91E-22	1188	1283	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.6E-23	1196	1278	No hit	No description
SMART	SM00666	9.2E-26	1198	1281	IPR000270	PB1 domain
PROSITE profile	PS51745	25.083	1198	1281	IPR000270	PB1 domain
Pfam	PF00564	1.3E-15	1199	1280	IPR000270	PB1 domain
CDD	cd06407	5.22E-40	1199	1280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1297 aa Download sequence Send to blast
MEDDGGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDS KNLKQTEQSG 60 SASTAMNDNS TFLCFGENPS QDNEETEENR SMNQESFNQA EKFLLEEAEL GKSWWIAPRA 120 SEGPSSSVKE RLLQAISGLN ETVQDKDFLV QIWVPVQQEG KSFLTTWAQP HLFNQEYSSL 180 AEYRHVSETY NFPADEGMND YVGLPGRVFL QKFPEWTPDV RFFRRDEYPR IKEARKCDVR 240 GSLALPVFER GSGICLGVVE IVTTTQKMNY RQELEKMCKA LEAVDLRSSS NLNTPSSEVY 300 SDFYCAALPE IKDFLATVCR SYDLPLALSW APCAPQGKRG SRHSDENFSH CVSTTDSACS 360 VPDEQSKSFW EACSEHHLLQ GEGIVGKAFK ATKLFFVPEV TTFSKTNYPL AHHAKISGLH 420 AALAVPLKSK SGLVEFVLEF FFPKACLNTE AQQEMLRSLS VTLQQDFRSS NLVIDKDLEL 480 EVVLPVRETM LFSENPVSGA ETAETLTGIQ MQESSWISHM IKANEKGKDV SLSWEYQKED 540 PKELSSGREN HQLDPSPNNV PLEAEQFQQA STSGLRVDSG PSTETPSTGG KNMLGSRRPG 600 ESRRSGEKRR TKTEKTIGLE VLRQHFAGSL KDAAKSIGVC PTTLKRICRQ HGIMRWPSRK 660 IKKVGHSLKK LQLVMDSVQG AQGTIQLDSF YTSFPELNSP NMSSNGPSLK SNEQSSHLNA 720 QTENGIMAEE NTAPRSPSSP CTKSSGSSNN NENTANILVS EDADAALNRA HSEVELHQVN 780 QEETNCPGRT QSHNTLKEPR VLENSPPLPG SSNKSLRAGG AIKVKATFGE VRIRFTLLPS 840 CGFRELQXVS LSWEYQKEDP KELSSGRENN QLDPSANNVP LEAEQLQQAS TSGLRVDSGP 900 STETPSTGGK NMSGSRRPGE KRRTKTERTI GLEVLRQHFA GSLKDAAKSI GVCPTTLKRI 960 CRQHGIMRWP SRKIKKVGHS LKKLQLVMDS VQGAQGTIQL DSFYTSFPEL NSPNMSSNGP 1020 SLKSNEQSSH LTAQTENGIM AEENTAPRSP SSPCTKSSGS SNNNENTANI LVSEDADAAL 1080 NRAHSEVELH QSSHLTAQTE NGIMAEENTA PRSPSSPCTK SSGSSNNNEN TANILVSEDA 1140 DAALNRAHSE VELHQVNQEE TNCPGRTQSH NTLKEPRVLE NSPPLPGSSN KSLRAGGAIK 1200 VKATFGEVRI RFTLLPSCGF RELQQEIARR FNIDDITWFD LKYLDDDKEW VLLTCEADLD 1260 ECIDIYRLTQ TQTIKISLNE ASQVKLGGSF GSAGPS*

Sequence ? help Back to Top

Protein Sequence Length: 1297 aa Download sequence Send to blast

MEDDGGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDS KNLKQTEQSG  60
SASTAMNDNS TFLCFGENPS QDNEETEENR SMNQESFNQA EKFLLEEAEL GKSWWIAPRA  120
SEGPSSSVKE RLLQAISGLN ETVQDKDFLV QIWVPVQQEG KSFLTTWAQP HLFNQEYSSL  180
AEYRHVSETY NFPADEGMND YVGLPGRVFL QKFPEWTPDV RFFRRDEYPR IKEARKCDVR  240
GSLALPVFER GSGICLGVVE IVTTTQKMNY RQELEKMCKA LEAVDLRSSS NLNTPSSEVY  300
SDFYCAALPE IKDFLATVCR SYDLPLALSW APCAPQGKRG SRHSDENFSH CVSTTDSACS  360
VPDEQSKSFW EACSEHHLLQ GEGIVGKAFK ATKLFFVPEV TTFSKTNYPL AHHAKISGLH  420
AALAVPLKSK SGLVEFVLEF FFPKACLNTE AQQEMLRSLS VTLQQDFRSS NLVIDKDLEL  480
EVVLPVRETM LFSENPVSGA ETAETLTGIQ MQESSWISHM IKANEKGKDV SLSWEYQKED  540
PKELSSGREN HQLDPSPNNV PLEAEQFQQA STSGLRVDSG PSTETPSTGG KNMLGSRRPG  600
ESRRSGEKRR TKTEKTIGLE VLRQHFAGSL KDAAKSIGVC PTTLKRICRQ HGIMRWPSRK  660
IKKVGHSLKK LQLVMDSVQG AQGTIQLDSF YTSFPELNSP NMSSNGPSLK SNEQSSHLNA  720
QTENGIMAEE NTAPRSPSSP CTKSSGSSNN NENTANILVS EDADAALNRA HSEVELHQVN  780
QEETNCPGRT QSHNTLKEPR VLENSPPLPG SSNKSLRAGG AIKVKATFGE VRIRFTLLPS  840
CGFRELQXVS LSWEYQKEDP KELSSGRENN QLDPSANNVP LEAEQLQQAS TSGLRVDSGP  900
STETPSTGGK NMSGSRRPGE KRRTKTERTI GLEVLRQHFA GSLKDAAKSI GVCPTTLKRI  960
CRQHGIMRWP SRKIKKVGHS LKKLQLVMDS VQGAQGTIQL DSFYTSFPEL NSPNMSSNGP  1020
SLKSNEQSSH LTAQTENGIM AEENTAPRSP SSPCTKSSGS SNNNENTANI LVSEDADAAL  1080
NRAHSEVELH QSSHLTAQTE NGIMAEENTA PRSPSSPCTK SSGSSNNNEN TANILVSEDA  1140
DAALNRAHSE VELHQVNQEE TNCPGRTQSH NTLKEPRVLE NSPPLPGSSN KSLRAGGAIK  1200
VKATFGEVRI RFTLLPSCGF RELQQEIARR FNIDDITWFD LKYLDDDKEW VLLTCEADLD  1260
ECIDIYRLTQ TQTIKISLNE ASQVKLGGSF GSAGPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g053930.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY090943	0.0	AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019096944.1	0.0	PREDICTED: protein NLP1-like isoform X1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	R0G2Z6	0.0	R0G2Z6_9BRAS; Uncharacterized protein
STRING	XP_010489333.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]