PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g053630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 571aa MW: 64752 Da PI: 4.7811 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 316 | 361 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ErrRR+++N+++ Lr+l+P+ +Kl+ a+iL A++Y+k+Lq Csa19g053630.1 316 NLMAERRRRKKLNDRLYALRSLVPTI-----TKLDRASILGDAINYVKELQ 361 5589*********************7.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.2E-18 | 10 | 148 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.704 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.65E-14 | 313 | 363 | No hit | No description |
SuperFamily | SSF47459 | 4.71E-18 | 314 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-11 | 316 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-16 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-17 | 318 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MESNMQNLLE KLRPLVGERD WDYCVLWRLN EDQRFVKWIG CCCGGTELIA ENGTEEFSFG 60 GCRDVMFHHP RTKSCESLSH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP TFMQETICTR 120 VLIPISGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMAADEV ESKPYGMLSG 180 ESHQKGSKDE DIMNLPSSYD ISSDQIRLNF LPQMSDYEAQ QHLKMKSDYH QQALGYLPEN 240 IIKEMMGLNP FNTMADDGIP VMGEPSLLVN EQQVANDKEM NENGRLDSGS DCSDQIDDED 300 DPKYKKKSGK GSQAKNLMAE RRRRKKLNDR LYALRSLVPT ITKLDRASIL GDAINYVKEL 360 QNEAKELQDE LEENSETEDG SNRQQGGMSL NGTVVTGFHP GLSCNSNVPN VKQDVDLDNS 420 NDKGQEMEPQ VDVAQLDGRE FFVKVICEYK SGGFTRLMEA LDSLGLEVTN ANTTRYLSLV 480 SNVFKVEKNH NEMVQAEHVR NSLLEITRNT SRGWHDDQMA TGSMQNEKNE VDFQHYDDHQ 540 HHHHPFDHQM NQSAHHHHHH QHINPYHNNQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 325 | KKKSGKGSQAKNLMAERRRRKK |
2 | 319 | 326 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g053630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488565 | 0.0 | AF488565.1 Arabidopsis thaliana clone bHLH021 putative bHLH transcription factor mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489298.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES isoform X1 | ||||
Swissprot | Q9ZVX2 | 0.0 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | R0I4J3 | 0.0 | R0I4J3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010489298.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7589 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 0.0 | bHLH family protein |