PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g050990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 480aa    MW: 53819 Da    PI: 7.0473
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g050990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-083053421954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  Csa19g050990.1 305 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 342
                     554458******************************88 PP
2BELL1276.7e-41167238172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqelq+k +kLls+l+eVd++Ykqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  Csa19g050990.1 167 ERQELQSKLSKLLSILDEVDRKYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 238
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.6E-69109236IPR006563POX domain
PfamPF075268.8E-46115235IPR006563POX domain
PROSITE profilePS5007111.564283346IPR001356Homeobox domain
CDDcd000866.08E-11286347No hitNo description
SMARTSM003895.9E-9286350IPR001356Homeobox domain
SuperFamilySSF466896.84E-17287353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-27289352IPR009057Homeodomain-like
PfamPF059208.9E-18303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MATYYRSGSS EIYSRPEYVP GNAMIYTNSF SETFPRESTN NDVSPSKEIQ VLSSFGGASQ  60
MVGIQDSGSW RDQEDNDRSC FPVMMRLGIS SQTTRSNNNN NEYATQAVSG FTRTIHNSKY  120
LKAAQQLLDE AVNVKKALKQ FQPEGDKVSE EKEKILQTNV AEIPQAERQE LQSKLSKLLS  180
ILDEVDRKYK QYYHQMQIVV SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV  240
IRKSLGGEHD GTDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL  300
RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTEAL  360
EENDPNLSSE NTPEITEIQE QQTESSSNNG HASGVASSNM GQSTVARSGD RFMMVTDMTR  420
NGSGGMSLTL GIQNSDARGD VPMSGRIDNH ENTISGTDFQ YLHSHNHQHR LGSSKLLHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14292350563Homeobox protein Meis2
3k2a_B1e-14292350563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g050990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0567960.0AY056796.1 Arabidopsis thaliana At2g16400/F16F14.10 mRNA, complete cds.
GenBankBT0006090.0BT000609.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g16400/F16F14.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489213.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_019096605.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLR0G4L10.0R0G4L1_9BRAS; Uncharacterized protein
STRINGXP_010489213.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]