PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g050380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 331aa    MW: 38133.6 Da    PI: 10.2078
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g050380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.91.2e-2019113199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+  + dv ++++  lp +f+++++  ke s ++++++++gr Wev +  +k+++  ++ ++GW++Fvk+n L   +f++F+++g+++f  +v
  Csa19g050380.1  19 FFKAVQSIDVASENMRALPHDFVRSFSD-KELSCKMKIRTQWGRFWEVAI--SKNPRFyFMEKSGWEKFVKDNALGHSEFLTFTHNGNMSF--TV 108
                     89999******************99965.57899****************..******555569***********************9999..99 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     ++f++
  Csa19g050380.1 109 SIFKQ 113
                     99975 PP
2B337.34.9e-122543231690
                     EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     l++p ++a++h+++  e+++ ++ +++g +sW+v +    + ++  +++GW++ vk+  L+ gD++ F+l++ +e 
  Csa19g050380.1 254 LRIPGSYAKDHMSE--EKTMFMIHHPDGkKSWNVVY--LVRFRA--FSGGWRSLVKEYPLDIGDTCKFTLIKPNEL 323
                     89*********866..45578888899989******..444444..89*********************9985444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1914119IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.6E-2219114IPR003340B3 DNA binding domain
CDDcd100176.78E-1819112No hitNo description
PROSITE profilePS5086314.00119114IPR003340B3 DNA binding domain
PfamPF023621.7E-1819113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-14235328IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.052239330IPR003340B3 DNA binding domain
SMARTSM010193.8E-15242330IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-11243328IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-10253328No hitNo description
PfamPF023622.7E-9254324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAGIADYLRC LQERKNEGFF KAVQSIDVAS ENMRALPHDF VRSFSDKELS CKMKIRTQWG  60
RFWEVAISKN PRFYFMEKSG WEKFVKDNAL GHSEFLTFTH NGNMSFTVSI FKQDGKEMLQ  120
PSQSRASLAS SSKICFSEYE TVNHIKTSNN SFTFDDETGR IKTEQRRVSV YNDVKKDEVV  180
SPELRNRAPT REAESNGGEK YKRKLSFRKK KAEETQNPKR TEKVVRARRD SAGASSSSVA  240
EFTILFKKAY LIFLRIPGSY AKDHMSEEKT MFMIHHPDGK KSWNVVYLVR FRAFSGGWRS  300
LVKEYPLDIG DTCKFTLIKP NELLLVVVKP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g050380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467314.10.0PREDICTED: B3 domain-containing protein At2g16210-like
SwissprotQ5BPT71e-131Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLR0G9A51e-178R0G9A5_9BRAS; Uncharacterized protein
STRINGXP_010467313.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-119B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]