PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g049120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 278aa    MW: 31325 Da    PI: 4.1112
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g049120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.91.7e-101348338
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                    i  k  r v fskR +g+  KA E++ L da++a++
  Csa19g049120.1 13 IGKKDSRAVAFSKRTKGLYSKAAEICLLADAQIAIL 48
                    667889****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-8366IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.596348IPR002100Transcription factor, MADS-box
CDDcd002662.45E-16581No hitNo description
SuperFamilySSF554551.7E-13578IPR002100Transcription factor, MADS-box
PfamPF003191.8E-91350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGGVKRKIPI EMIGKKDSRA VAFSKRTKGL YSKAAEICLL ADAQIAILAT PVSSYSNASY  60
YSFGHSSVDN VVAAFLANQR PREDLGLGLG FWWEDERLAK SEDPEELRDA INSMSKMLQD  120
LKDSRFNALQ NRLDCEDVEK KGLLILNLVA TTRTTMLYLE TWTDAIRNEV HTDLYDDNIH  180
LSNLDEDLML QISDNNCINN NVLSENFDEF IQELDLDHIF DFETNYMKSF EMDDVSMVTT  240
NSETVGDGGL VTDHIDLDED NLCFSDYFNE LTSPAPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g049120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490384.11e-146PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A178UP046e-98A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ616e-98Q9LZ61_ARATH; AGAMOUS-like 99
STRINGXP_010490384.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-102AGAMOUS-like 99