PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g040820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRF | ||||||||
Protein Properties | Length: 256aa MW: 29330 Da PI: 8.0517 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.1 | 7.2e-24 | 84 | 126 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 daepgrCrRtDGKkWRCs+++++++k+CErH+hrg++rs+++k Csa19g040820.1 84 DAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRK 126 79*************************************9987 PP | |||||||
2 | QLQ | 59.8 | 7.9e-21 | 6 | 41 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++ Csa19g040820.1 6 PFTESQWEELENQALVFKYLAANVPVPPHLLFLIKR 41 8******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.7E-14 | 5 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.7E-15 | 6 | 39 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.49 | 6 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.668 | 84 | 129 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.5E-19 | 85 | 126 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MATRIPFTES QWEELENQAL VFKYLAANVP VPPHLLFLIK RPFLFSSSSS SSSSSPLPSS 60 FFSPTLSPHF GWNVYEMGMG RKIDAEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGKN 120 RSSSRKPLPL TPPPQFTPNL FLESSLSSSR VSRRRRSGYM DDFFSIEPCG SIKSCSGSAM 180 EDDEGSCREK QPDRHCFILG TDLGTRERPL MLDEEKLKQR DDDDEDEEEQ RSKRLYRFLD 240 EWPSSKSSVS TSLFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g040820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060586 | 1e-133 | AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. | |||
GenBank | AY125572 | 1e-133 | AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488793.1 | 0.0 | PREDICTED: growth-regulating factor 6-like | ||||
Swissprot | Q9ZQ12 | 1e-129 | GRF6_ARATH; Growth-regulating factor 6 | ||||
TrEMBL | A0A178VV28 | 1e-127 | A0A178VV28_ARATH; GRF6 | ||||
TrEMBL | A0A1P8B259 | 1e-127 | A0A1P8B259_ARATH; Growth-regulating factor 6 | ||||
STRING | XP_010488793.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14101 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06200.1 | 1e-101 | growth-regulating factor 6 |
Publications ? help Back to Top | |||
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