PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g036380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 335aa MW: 39222.1 Da PI: 4.4442 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.1 | 2.6e-14 | 93 | 177 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k +k + ss++++f++l+ Csa19g036380.1 93 WREQEAFVLLEIWGDRFLQLGRRSLRNEDWNEVAEKVsEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 177 *************************************788899*********************977776.478999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-20 | 92 | 178 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGDSEDETGY PKKFYSLNRQ SHPMYSRPIP KRHAYYHEEE DEDEVDGDEE EPQGQGGYSR 60 GNERFQKRQK PNKPVASGYD FAGPSDGKVG YDWREQEAFV LLEIWGDRFL QLGRRSLRNE 120 DWNEVAEKVS EELRMEKSET QCRRMIDNLK RKYRKEKIKV EKSGLGSSKW AFFNKLDMLL 180 CVSPKSDLGL ACGVDSGEFV FMNTKVYLDK SNGFDEMMDS PGDSEEEEDE EDEVDYERKK 240 FNDAASYKML ADSVERFGKV YEKMEKSKKD QMKELEKMRA DFQKDLELQK KQIVDRAQSE 300 IARLREEEEN YHRGDDESED EEMENNSDVN LSDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g036380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB020746 | 0.0 | AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488557.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | D7L537 | 0.0 | D7L537_ARALL; Uncharacterized protein | ||||
STRING | XP_010488557.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9779 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 0.0 | Trihelix family protein |