PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g036250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 332aa    MW: 38338.6 Da    PI: 7.0136
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g036250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-131151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    ien+  r +   kRr+g+lKK eE+ +LCd+++++i+fs++
  Csa19g036250.1 11 IENDNSRVIRSKKRREGLLKKIEEVTILCDVKACIIMFSPE 51
                    99999999999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.507149IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-19182IPR002100Transcription factor, MADS-box
CDDcd002663.09E-25285No hitNo description
PRINTSPR004048.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MARKKIKLAW IENDNSRVIR SKKRREGLLK KIEEVTILCD VKACIIMFSP EEDYPMVWPS  60
LKQVRDLLDD FFALPEIEKK KKETSLQSYL KEKTKKVHEQ LMKTHKKNQN YAIDQMMLQL  120
HRGRSIADLD LNEIYALISF SKDNVMLHRK KLHFVQHSPL RDPPDPLFER KFEEFETTTN  180
GVFARGRQED ERAWNTNEAM KEININAAIP GNQQSCYLID QWFPFQGNNI NGLEMEPIGA  240
PVISFHGLVG SVSQPLQHHN TNNNPTMAMS QPNQCPFDFM NPEFGVKDKG SIVNNGDSQF  300
QRRSNTIEIS NDIRRESPAK EATDGEDNDM M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIKLAWIENDNSRVIRSKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g036250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096769.10.0PREDICTED: floral homeotic protein PMADS 1-like
TrEMBLV4NQI01e-126V4NQI0_EUTSA; Uncharacterized protein
STRINGBostr.19424s0082.1.p1e-150(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-96AGAMOUS-like 48