PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g035950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 263aa MW: 29040.7 Da PI: 8.4945 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.2 | 1.3e-19 | 185 | 219 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l Csa19g035950.1 185 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 219 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-15 | 179 | 229 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-15 | 182 | 242 | No hit | No description |
PROSITE profile | PS50114 | 11.873 | 182 | 215 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.4E-15 | 183 | 217 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.39E-14 | 184 | 231 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 185 | 210 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.8E-17 | 185 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEMESFMDDL LNFSVPEEEE EDEAQPPRNI TRRKTGIRQT DPLGLFNHGD HGVVEEEDLE 60 WISNKDAFPV IETFVGVLPL SEHFGVTSPE REAIEGKQRS PVSVLETSSN SSTTTTTSNS 120 SGGSTAVTTT TTSMLMSCCV SFKAPAKARS KRRRTGRRDL RVLWTGNEIQ KKKTISAAVI 180 IGRKCQHCGA EKTPQWRAGP LGPKTLCNAC GVRYKSGRLV PEYRPANSPT FTAELHSNSH 240 RKIVEMRKQY QSGDGDHRKV CG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g035950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT024497 | 1e-178 | BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds. | |||
GenBank | Y13648 | 1e-178 | Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488502.1 | 0.0 | PREDICTED: GATA transcription factor 1-like isoform X1 | ||||
Swissprot | Q8LAU9 | 1e-122 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | R0HN96 | 1e-124 | R0HN96_9BRAS; Uncharacterized protein | ||||
STRING | XP_010488502.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12987 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 7e-61 | GATA transcription factor 1 |