PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g035370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 369aa    MW: 40260.6 Da    PI: 5.3053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g035370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-10200247455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Csa19g035370.1 200 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 247
                     8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-17194265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-11194251No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17196265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNMDKETEQT LNYLPLGQSD PFGNGSDGSI GDFLGRYCNP QEISPLTLQS FSLNSQISEN  60
FPISGGIRFP PYPGQFGSDR EFGVLGSQPT TQESNKSSLL DPDSVSDRVH TTKSNSRKRK  120
SIPTGNGKES PASSSLTASN SKVSGENGGS KAGKRSKQDE AGSSKNGIEK CDSKGDDAKP  180
PEAPKDYIHV RARRGQATDS HSLAERARRE KISERMTLLQ DLVPGCNRIT GKAVMLDEII  240
NYVQSLQRQV EFLSMKLATV NPRMEFNANA SLSTEMIQPG ESLTQSLYAI ACSEQRLPSA  300
YYSLGKNMPR FSDTQFPSND GFVQAETPGF WENNDLQSIV QMGFGDIQQQ SSNNNNCSEP  360
TLQMKLEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g035370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654410.0AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965360.0AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488446.10.0PREDICTED: transcription factor bHLH77
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLR0HM890.0R0HM89_9BRAS; Uncharacterized protein
STRINGXP_010488446.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]