PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g035360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 821aa    MW: 94065.1 Da    PI: 8.0776
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g035360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.66e-221462149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk + +
  Csa19g035360.1 14 KKIKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKAFSF 62
                    68******************************************97766 PP
2SRF-TF68.66e-22251299149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     k+i+n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk + +
  Csa19g035360.1 251 KKIKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKAFSF 299
                     68******************************************97766 PP
3SRF-TF528.8e-17562603849
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                        vtfskRr g++KKA+EL++L +ae+++i+fs+ gk + +
  Csa19g035360.1 562 LDMVTFSKRRFGLFKKASELCTLSGAEILMIVFSPGGKAFSF 603
                     567**********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.147666IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-34665IPR002100Transcription factor, MADS-box
CDDcd002651.29E-36783No hitNo description
SuperFamilySSF554555.49E-28793IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18828IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231562IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-184364IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-32243302IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.801243303IPR002100Transcription factor, MADS-box
CDDcd002659.81E-35244320No hitNo description
SuperFamilySSF554553.53E-27246332IPR002100Transcription factor, MADS-box
PfamPF003191.2E-23252299IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-16550606IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-19564635IPR002100Transcription factor, MADS-box
PfamPF003197.7E-18564603IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.414565607IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MVRSNKGRQK IEMKKIKNES NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGGKAF  60
SFGHPSVREL IHRFLNVNHN SLIPHQPNYN LQLAESHPDR NIQYLNEMLT QTGEGETNRM  120
TLDMVRQSRE ERGKSWYEKD VKELDLNETD NLICALQDGK KTFVSEMFDY PQLNVSHQSY  180
MGESFVFGGG RNVDVGGIEL FDQRVNTFSY NPVMDFPYQT PFFGYNNVGV IVPGYNMNYI  240
SNKGLQKIEM KKIKNESNLQ VTFSKRRFGL FKKASELCTL CGAEILMIVF SPGGKAFSFG  300
HPGVKELIHR FLNVNHNSLI PHQPNYNQQL AESCLDRNIQ YLNEMLTQVL ARQEKAKHNR  360
MALDMVRQSR EERGKSWYEK DVKELDLNET DNLICALQDV KKKVVSEMSD YPQLNVSHQS  420
YMGETFVFGG GRNVDVGGID LFDQRVNTFS YNPVMDFPYQ TPFFGYNNDG VIVPGYNMNY  480
MSKILMIVFS PGGKAFSFGH PSVRELIHRF LNVNHNSLIP HQPNYNLQLA ESRPDRNIQY  540
LNEMLTQVLT RQEKAKHNRM TLDMVTFSKR RFGLFKKASE LCTLSGAEIL MIVFSPGGKA  600
FSFGHPSVRE LIHRFLNVNH NSLIPHQTNY NLQLVESRPD RNIQYLNEML TQVLARQKKA  660
KHNRMILEMV RQSREERGKS WYEKDVKELD LNETDNLICA LQDVKKTFVS EMSDYPQLNV  720
SHQSYMGESF VFGGGRNVDV DGIDLFDQRV NTFSSNPVMD FPYQTPFFGY NNDENFDDCV  780
LSPGGKAVSF GHSSVRGYRS VADLVACGVL MQGNLEEVLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A6e-157333186Myocyte-specific enhancer factor 2A
3kov_B6e-157333186Myocyte-specific enhancer factor 2A
3kov_I6e-157333186Myocyte-specific enhancer factor 2A
3kov_J6e-157333186Myocyte-specific enhancer factor 2A
3p57_A6e-157333186Myocyte-specific enhancer factor 2A
3p57_B6e-157333186Myocyte-specific enhancer factor 2A
3p57_C6e-157333186Myocyte-specific enhancer factor 2A
3p57_D6e-157333186Myocyte-specific enhancer factor 2A
3p57_I6e-157333186Myocyte-specific enhancer factor 2A
3p57_J6e-157333186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g035360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490081.11e-174PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM52e-99A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLO232222e-99O23222_ARATH; MADS-box protein
STRINGXP_010490081.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-104M-type_MADS family protein