PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g034360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 200aa MW: 23022.4 Da PI: 9.8994

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g034360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60	2.9e-19	14	62	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n+sn qv fskRr g++KKA+ L++LC+ae+++i+fss gk + + Csa19g034360.1 14 KKIKNESNLQVPFSKRRFGLFKKASVLCTLCGAEILMIVFSSGGKAFSF 62 68******************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.679	6	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.3E-28	6	65	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.30E-34	7	83	No hit	No description
PRINTS	PR00404	3.6E-18	8	28	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-25	8	95	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-20	15	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-18	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-18	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MVRSNKARQK IEMKKIKNES NLQVPFSKRR FGLFKKASVL CTLCGAEILM IVFSSGGKAF 60 SFGHPGVREL IHRFLNVIHN SLIPHQPNYN LQLVESRPDR NIQYLNKILT QVLARQETEK 120 HNRMTLDMSY MGESFVFGGG RNVDVGGIDL FDQRVNTFSY NPVMDFPYHT PFFGYNNDGV 180 ISPGYNMNYM LSYNFNERY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g034360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421657.1	1e-105	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	8e-42	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A178UZM5	5e-79	A0A178UZM5_ARATH; Uncharacterized protein
TrEMBL	O23222	5e-79	O23222_ARATH; MADS-box protein
STRING	XP_010421657.1	1e-104	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14294	10	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	9e-84	M-type_MADS family protein

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]