PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g034350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 286aa MW: 33200 Da PI: 9.7952

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g034350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.6	1.4e-22	2	50	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk + + Csa19g034350.1 2 KKIKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKAFSF 50 68******************************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.993	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.7E-26	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.07E-34	1	71	No hit	No description
SuperFamily	SSF55455	3.27E-25	1	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-24	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-9	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-9	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKKIKNESNL QVTFSKRRFG LFKKASELCT LCGAEILMIV FSPGGKAFSF GHPSVRELIH 60 RFLNVNHNSL IPHQTNYNLQ LVESRPDRNI QYLNEMLTQV LARQKKAKHN RMTLDMVRQS 120 REERGKSWYE KDVKELDLNE TDNLICALQD VKKTFILMIV FSPGGKAFSL GHPGVRELIH 180 HFLNVNHNSL IPHQPNYNLQ LAESRPDRNI QYLNEMLTQV LARPENAKHN RMTLDMFDQR 240 VNTFSYNPVM DFPYQTPFFG YNNDGVIGLG YNMNYMSSHN FNGRY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g034350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421657.1	1e-134	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	4e-42	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A178UZM5	1e-76	A0A178UZM5_ARATH; Uncharacterized protein
TrEMBL	A0MFC4	1e-76	A0MFC4_ARATH; Uncharacterized protein (Fragment)
TrEMBL	O23222	1e-76	O23222_ARATH; MADS-box protein
STRING	XP_010421678.1	1e-150	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14294	10	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	2e-81	M-type_MADS family protein

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]