PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g033650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 284aa MW: 32338.4 Da PI: 9.9569 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.9e-20 | 19 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps ng +r +lg+f taeeAa+a+++a+ +l+g+ Csa19g033650.1 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFNLRGH 70 69*******.**********98887..**************************97 PP | |||||||
2 | AP2 | 63.4 | 4.9e-20 | 161 | 212 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps ng +r +lg+f taeeAa+a+++a+ +l+g+ Csa19g033650.1 161 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFNLRGH 212 69*******.**********98887..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.69E-27 | 18 | 78 | No hit | No description |
Pfam | PF00847 | 2.4E-14 | 19 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 19 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.684 | 19 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-31 | 19 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-37 | 19 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 43 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-27 | 160 | 220 | No hit | No description |
PROSITE profile | PS51032 | 24.684 | 161 | 219 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 161 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-31 | 161 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-37 | 161 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 161 | 220 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MESSNRRNNS QSQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY 60 DRAAFNLRGH LAILNFPNEY YSRMDDYSLR PPNASSSSSS SSASTSTNLD ALYTGIIHRS 120 LLLNNIADQA LTKQANLEPP KLMESSNRRN NSQSQDDKQA RFRGVRRRPW GKFAAEIRDP 180 SRNGARLWLG TFETAEEAAR AYDRAAFNLR GHLAILNFPN EYYSRMDDYS LRPPNASSSS 240 SSSSASTSTN VSRQSQREVF EFEYLDDRVL EELLDSEERN RRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-32 | 16 | 269 | 11 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g033650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025608 | 0.0 | AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488371.1 | 2e-85 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Refseq | XP_010488372.1 | 2e-85 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 2e-73 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | R0HQU3 | 3e-77 | R0HQU3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010488371.1 | 9e-85 | (Camelina sativa) | ||||
STRING | XP_010488372.1 | 9e-85 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 8e-61 | ERF family protein |
Publications ? help Back to Top | |||
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