PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g033650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 284aa    MW: 32338.4 Da    PI: 9.9569
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g033650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-201970256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +++GVr+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+ +l+g+
  Csa19g033650.1 19 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFNLRGH 70
                    69*******.**********98887..**************************97 PP

2AP263.44.9e-20161212256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +++GVr+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+ +l+g+
  Csa19g033650.1 161 RFRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFNLRGH 212
                     69*******.**********98887..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-271878No hitNo description
PfamPF008472.4E-141970IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-231978IPR016177DNA-binding domain
PROSITE profilePS5103224.6841977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-311979IPR001471AP2/ERF domain
SMARTSM003807.3E-371983IPR001471AP2/ERF domain
PRINTSPR003671.0E-102031IPR001471AP2/ERF domain
PRINTSPR003671.0E-104359IPR001471AP2/ERF domain
CDDcd000181.69E-27160220No hitNo description
PROSITE profilePS5103224.684161219IPR001471AP2/ERF domain
PfamPF008472.4E-14161212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-31161221IPR001471AP2/ERF domain
SMARTSM003807.3E-37161225IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23161220IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESSNRRNNS QSQDDKQARF RGVRRRPWGK FAAEIRDPSR NGARLWLGTF ETAEEAARAY  60
DRAAFNLRGH LAILNFPNEY YSRMDDYSLR PPNASSSSSS SSASTSTNLD ALYTGIIHRS  120
LLLNNIADQA LTKQANLEPP KLMESSNRRN NSQSQDDKQA RFRGVRRRPW GKFAAEIRDP  180
SRNGARLWLG TFETAEEAAR AYDRAAFNLR GHLAILNFPN EYYSRMDDYS LRPPNASSSS  240
SSSSASTSTN VSRQSQREVF EFEYLDDRVL EELLDSEERN RRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-321626911114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g033650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256080.0AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488371.12e-85PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_010488372.12e-85PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-73ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLR0HQU33e-77R0HQU3_9BRAS; Uncharacterized protein
STRINGXP_010488371.19e-85(Camelina sativa)
STRINGXP_010488372.19e-85(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-61ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]