PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g033630.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 334aa MW: 36717.9 Da PI: 4.7364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g033630.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	180	227	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + + +K +K++iL A++ +++L Csa19g033630.1 180 TKACREKLRREKLNDRFMDLSSVLEPG---RTPKTDKVAILDDAIRVVNQL 227 6789********************8...8**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.31E-9	167	228	No hit	No description
SuperFamily	SSF47459	6.94E-13	167	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.154	176	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-8	180	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-11	182	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	182	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MYPSIHDDDD LLAALCFDQS NGVEDPYGFI QTNEDGTNIF QDFGSSGVNL QQPQQQGLQF 60 DSFSGNLEQV CSFRGENEGV VYSSSIGSAQ LDLGASFSGV LQREETQQVC GFRGGNDDSS 120 AAAAAAPHLL QQGPGQVVCS DVVEINSSSS VGGVKEELEH VEEECSKKRR RTGSCNKPGT 180 KACREKLRRE KLNDRFMDLS SVLEPGRTPK TDKVAILDDA IRVVNQLRGE AHELTETNQK 240 LLEEIKNLKA EKNELREEKL VLKADKEKIE QQLKSMAVPP SSFMPPQHPA TFHPNKMAMY 300 PSYGYYPNMS MWPFVNPAGR DSSQDVKDHA PVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g033630.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488368.1	0.0	PREDICTED: transcription factor bHLH34
Swissprot	Q9LTC7	1e-178	BH034_ARATH; Transcription factor bHLH34
TrEMBL	R0HMW7	0.0	R0HMW7_9BRAS; Uncharacterized protein
STRING	XP_010488368.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-160	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]