PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g029390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 376aa    MW: 41662.6 Da    PI: 6.5739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g029390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08284324954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Csa19g029390.1 284 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 324
                     69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13280339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.22E-11281329No hitNo description
SMARTSM003535.9E-13281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-6284324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MCSAVTTTRI VFDLMEGLES VYAQAMYGMT RESKIMDHHQ GSDLIWGGNE LMMARELCSS  60
SSSFHHHHQL INPNLSSCFM SDLGVIGEIQ QQQEHVGNRA SSIDPSSLDC LLSATSNSNN  120
TSTEDDEGIS VLFSDSQTLW SFGGVSSAES ENREITPETA TTTTVNPKSL KRNRGGDEKG  180
SHFRLVRPQD DSEKGGFKLI YNEDQSKSKK PRTEKERGGS SNISFQHSTC VSDNTEPDAE  240
AIAQMKEMIY RAAAFRPVNF GLEVVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT  300
LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDP TNLSFSSAPS PSFPLFHPSF  360
LPLQNPHQIH HQPEC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g029390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886170.0AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013050.0AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203640.0BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488147.10.0PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLR0G6090.0R0G609_9BRAS; Uncharacterized protein
STRINGXP_010488147.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]