PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g029120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 299aa    MW: 32840.6 Da    PI: 7.3972
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g029120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.43.4e-17218254135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Csa19g029120.1 218 CRHCGTSEksTPMMRRGPAGPRTLCNACGLMWANKGT 254
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.5E-1373108IPR010399Tify domain
PROSITE profilePS5132014.21773108IPR010399Tify domain
PfamPF062002.9E-1278107IPR010399Tify domain
PROSITE profilePS5101712.937142184IPR010402CCT domain
PfamPF062033.3E-14142184IPR010402CCT domain
SMARTSM004012.7E-9212265IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.156212260IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-13214270No hitNo description
Gene3DG3DSA:3.30.50.109.3E-16217259IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
PfamPF003204.3E-15218254IPR000679Zinc finger, GATA-type
CDDcd002022.72E-16218267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNGHRGNNGR MHIGVAQDPM HVHYEHQGLH HIDNGNGMMD DHSDGGMDEG VETDIPTHPG  60
NAADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ AVLLLLGGRE VPPQTLPPSY  120
GSPHQNNRGL SGTPQRLSVP QRLASLIRFR EKRKERNFDK TVRYVVRKEV ASRMQRKRGQ  180
FTSAKSSNDD SASTGSDWGS SQRWAVEGSE TQKPEILCRH CGTSEKSTPM MRRGPAGPRT  240
LCNACGLMWA NKGTLRDLSK VPPPQTPQNL PVNELQDPNL EADQVIGVAG DMTTHSEN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g029120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428170.0AY042817.1 Arabidopsis thaliana Unknown protein (MXL8.2) mRNA, complete cds.
GenBankAY0646280.0AY064628.1 Arabidopsis thaliana unknown protein (MXL8.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488106.10.0PREDICTED: GATA transcription factor 24 isoform X2
SwissprotQ8GXL70.0GAT24_ARATH; GATA transcription factor 24
TrEMBLR0I4990.0R0I499_9BRAS; Uncharacterized protein
STRINGXP_010488103.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-175ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]