PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g028720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 239aa    MW: 26112.2 Da    PI: 9.5407
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g028720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.5e-19197230235
            GATA   2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     +nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++
  Csa19g028720.1 197 VNCNALTTPMWRRGPLGPKSLCNACGIKFRKEEE 230
                     39*****************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-9190238IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-10193230No hitNo description
PfamPF003201.4E-16195230IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.688197226IPR000679Zinc finger, GATA-type
CDDcd002023.05E-10197227No hitNo description
Gene3DG3DSA:3.30.50.101.1E-12197230IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MENELDLTLK LGLPNSTVVE THLSLNTSTT TSTITDQGTI NTNVVVDGGR GDHNNNNEGS  60
RGGISNDGGE VFNLRRSLRG DHEVINDQGA RSNVDMNIRV YNYIFQQFVG VPNTLNVGPY  120
PMPPSPRSTP ALAVTPEFVL IDVPARRASR NNTELMANAW NETPSAHAKR LRGCDGYYRG  180
GRGGGRGEGT LRKCTNVNCN ALTTPMWRRG PLGPKSLCNA CGIKFRKEEE RKSKRNRE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RGGRGGGRG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g028720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936256e-53AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488061.11e-175PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT453e-66GAT29_ARATH; GATA transcription factor 29
TrEMBLR0GBK14e-85R0GBK1_9BRAS; Uncharacterized protein
STRINGXP_010488061.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-53GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]