PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g027510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 480aa    MW: 53999 Da    PI: 8.0151
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g027510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.4e-10249288443
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                     + k +r+v  skRr++++ KA  L+ L +a++av + s+ 
  Csa19g027510.1 249 DTKQQRSVACSKRRQTLFSKAADLCLLSGANIAVFVTSPA 288
                     56889*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5105012.6671568IPR011124Zinc finger, CW-type
PfamPF074963.7E-142064IPR011124Zinc finger, CW-type
SMARTSM004327.4E-17238297IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.755238286IPR002100Transcription factor, MADS-box
CDDcd002663.31E-21239306No hitNo description
SuperFamilySSF554555.49E-16240331IPR002100Transcription factor, MADS-box
PfamPF003194.4E-10251297IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDVGFDFAVA PASTSLHLEN WAQCDSCGTW RLLPLGLNTE KLPDKWLCSM QTWLPGMNHC  60
GDQQVDQKAK WRSAGTDCQI KTKKKKEGDK QESDGSKHIT TGVGNKLARG MKVEEIHWNQ  120
DPEWTPAERK TKRPDNDFHT LDIERDTKKR LLASKSKPDH KRHLPTASGS LCTKAHCRIN  180
TPVRKIRLMG SKQGSDGNSL KLFADSDQKE PSMVKATINK ISKQQTLIIM PAMTKRRGTK  240
RKIEIKKRDT KQQRSVACSK RRQTLFSKAA DLCLLSGANI AVFVTSPAEN NDVVYSFSGY  300
SPASEIADCY LNGKPPTMII NPQSKLGFWW EDPDLYRYCD DLSELNVIED RMMRTRKHLM  360
ACLDKKEKSQ SVSNSDQNPS PSSLDENPKS SSPSSCDEIA SFEQNCTFSS LEKICGEPSS  420
QATCYYDQNH TFAIEDLYRD SSSGQSGYLL KEDDVGFVES LWETEKQSDI MSMFQETVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235241RRGTKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g027510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545911e-171AC254591.1 Capsella rubella clone CAP08-M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487931.20.0PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096884.10.0PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096885.10.0PREDICTED: uncharacterized protein LOC104765850 isoform X1
RefseqXP_019096886.10.0PREDICTED: uncharacterized protein LOC104765850 isoform X1
STRINGXP_010487927.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.17e-93M-type_MADS family protein