PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g026030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 399aa    MW: 44896.2 Da    PI: 9.957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g026030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.8e-243683451
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ++s r ++++kRr++++KKA+ELS+LC+++v+vi+++++g+l+++++
  Csa19g026030.1 36 ASSSARATSLIKRRETVFKKANELSILCGIDVCVIYYGPDGELKTWPK 83
                    68999*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-101384IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-1736116IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.5313785IPR002100Transcription factor, MADS-box
PfamPF003199.9E-173781IPR002100Transcription factor, MADS-box
CDDcd002663.67E-1845109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVSFSSCSLS TSSSTKKNSM RFPQIQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS  60
ILCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYGALSE RKRRKGRVDL YEFLDKINKD  120
DSKKKDKKKQ KKEKPVRRVA KVKYPVWDPR FDNYSAEQLS GLVQSLERNL TRIQQRVRAV  180
VEGHGQRKIQ YLNMASQGPM MPSTMNQYFQ QQPNQHVSMF LYNHGNGNVS QIPVSASALN  240
QGQSLAPVPP ELLIYPNQDV GNYSGSFGAQ GTGINGSQNM NMLTYNNINS FNGFSKQIDQ  300
NSRVGSYSSL LEDGIDEFED SRNNFNAEDY SGFLGAQGTV TNGMQNMNMH DNNNNSVNAN  360
GHSHQFGQFQ TQQQHGAFNW DQPGSNFRSL YDLPQPLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131KKDKKKQKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g026030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487788.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-168AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLR0I8551e-177R0I855_9BRAS; Uncharacterized protein
STRINGXP_010487788.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-149AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]