PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g026030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 399aa MW: 44896.2 Da PI: 9.957 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.7 | 1.8e-24 | 36 | 83 | 4 | 51 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s r ++++kRr++++KKA+ELS+LC+++v+vi+++++g+l+++++ Csa19g026030.1 36 ASSSARATSLIKRRETVFKKANELSILCGIDVCVIYYGPDGELKTWPK 83 68999*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-10 | 13 | 84 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-17 | 36 | 116 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.531 | 37 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.9E-17 | 37 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.67E-18 | 45 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MVSFSSCSLS TSSSTKKNSM RFPQIQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS 60 ILCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYGALSE RKRRKGRVDL YEFLDKINKD 120 DSKKKDKKKQ KKEKPVRRVA KVKYPVWDPR FDNYSAEQLS GLVQSLERNL TRIQQRVRAV 180 VEGHGQRKIQ YLNMASQGPM MPSTMNQYFQ QQPNQHVSMF LYNHGNGNVS QIPVSASALN 240 QGQSLAPVPP ELLIYPNQDV GNYSGSFGAQ GTGINGSQNM NMLTYNNINS FNGFSKQIDQ 300 NSRVGSYSSL LEDGIDEFED SRNNFNAEDY SGFLGAQGTV TNGMQNMNMH DNNNNSVNAN 360 GHSHQFGQFQ TQQQHGAFNW DQPGSNFRSL YDLPQPLQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 131 | KKDKKKQKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g026030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010487788.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL103 | ||||
Swissprot | Q9LSB2 | 1e-168 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | R0I855 | 1e-177 | R0I855_9BRAS; Uncharacterized protein | ||||
STRING | XP_010487788.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 1e-149 | AGAMOUS-like 103 |
Publications ? help Back to Top | |||
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