PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g023950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 294aa    MW: 34081.9 Da    PI: 10.5379
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g023950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.7e-147723098
                    ..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 30 keesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    k  s +++++ ++g+sW+vk+  +k+ + y+++ +GW +Fv++n L  ++f++F ++g++ f  +v++++
  Csa19g023950.1  7 KDFSYKMVIRAQWGKSWNVKV--SKNTRYYYIEkRGWDQFVSDNSLGRNEFITFIHKGKMIF--NVHIYE 72
                    4577899**************..888888555549********************9998988..777765 PP
2B343.55.7e-142012821299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++ l +pk+f+++h    ++sk+ t+++++g+sW+v +    ++ r+++++G ++ +++  + +gD ++Fkl++  +fe+v+ +f+k
  Csa19g023950.1 201 YLKFLAIPKQFVDDHLP--QKSKMFTIRHPKGKSWKVLC--LVRDVRTIFSGGYSKLAREFPISVGDKCTFKLID--TFEFVLDIFKK 282
                     446699********963..47889***************..999999*************************997..77779999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.2E-4174IPR003340B3 DNA binding domain
CDDcd100172.70E-9171No hitNo description
PROSITE profilePS5086312.026174IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-14579IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-12672IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-151075IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-18190283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-19190282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.223190283IPR003340B3 DNA binding domain
CDDcd100171.23E-13191281No hitNo description
SMARTSM010193.2E-16193283IPR003340B3 DNA binding domain
PfamPF023621.9E-12200282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSKISKKDFS YKMVIRAQWG KSWNVKVSKN TRYYYIEKRG WDQFVSDNSL GRNEFITFIH  60
KGKMIFNVHI YEQNCMEILI PRNLLSMGSS SGIKREEGDC SYKDVKKENE EIDESPGRVE  120
IKIRKKKTEV TKTSKKKMLN KNVKNVMERG ESSRGVELKA MKKKGEASIS SKKKKSKSKS  180
KSNKKVIDGA PEFEITIKKS YLKFLAIPKQ FVDDHLPQKS KMFTIRHPKG KSWKVLCLVR  240
DVRTIFSGGY SKLAREFPIS VGDKCTFKLI DTFEFVLDIF KKTREEIPHC MID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g023950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936182e-72AB493618.1 Arabidopsis thaliana At3g17010 mRNA for hypothetical protein, partial cds, clone: RAAt3g17010.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487573.10.0PREDICTED: B3 domain-containing protein At3g17010
SwissprotQ9LSP61e-123Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLR0I7T01e-147R0I7T0_9BRAS; Uncharacterized protein
STRINGXP_010487573.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-116B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]