PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g023630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26910.4 Da PI: 5.7682 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+W+AeIrdp++ r++lg+f taeeAa a++ a+k+++g Csa19g023630.1 77 VYRGIRKRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAVAYDVAAKRIRG 126 69*******.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.2E-37 | 77 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 77 | 135 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 77 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 77 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.21 | 77 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.87E-33 | 78 | 136 | No hit | No description |
PRINTS | PR00367 | 2.5E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MCGGAIISDF APLVTKAKGR KLTAEELWSE LDVSAGDNFW GFDSTSKFHP TNQVNVKEEA 60 AKKEPATTEK RRKRKNVYRG IRKRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAAVAYDVA 120 AKRIRGDKAK LNFPDLSHHP PPLPPQVLSS PSVSLTDHQP PAKKLCVVSQ SELITQPSYP 180 VECVGFGNGF ETDYDLKQQI SSLESFLELD ATTADEQLSR LDESVSEVDM WMLDDVIASY 240 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-23 | 78 | 134 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 84 | RRKRKNVYRGIRKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g023630.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ001911 | 1e-147 | AJ001911.1 Arabidopsis thaliana mRNA for ethylene-responsive element binding protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010487543.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 1e-132 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A178VEQ3 | 1e-129 | A0A178VEQ3_ARATH; RAP2.3 | ||||
TrEMBL | O23143 | 1e-129 | O23143_ARATH; Putative Ckc2 | ||||
STRING | XP_010487543.1 | 1e-179 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-115 | ethylene-responsive element binding protein |