PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g022280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 300aa MW: 33375.4 Da PI: 8.948

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g022280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.5	4.8e-31	6	81	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl Csa19g022280.1 6 GEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASdGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 81 689***********************************9967788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.652	1	115	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-38	4	116	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	9	81	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
AKASFGEQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPVLASDGN QKVGVKKALV 60 FYSGKPPKGV KSDWIMHEYR LIENKLNNRP PVCDFGNKKN SLRLDDWVLC RIYKKNNAGR 120 HVDNDKDHDM IDYIFRKIPP SLSAATGLHH HHHNVSRSMN FFPGKFSGGG YGIYSDGNTS 180 LYDGGGMINN NMDTESVDHR DNNNVDVVGL NHASSSVPMM MMANQKRAFP VPYWPVAEEE 240 QDASPSKRFH GGGGDCSNMS SSMMEETPPM MQQQGGGVLG DGLFRTTPYQ LPGLNWYPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	2	120	65	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	2	120	65	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	2	120	65	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	2	120	65	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	2	120	68	173	NAC domain-containing protein 19
3swm_B	1e-46	2	120	68	173	NAC domain-containing protein 19
3swm_C	1e-46	2	120	68	173	NAC domain-containing protein 19
3swm_D	1e-46	2	120	68	173	NAC domain-containing protein 19
3swp_A	1e-46	2	120	68	173	NAC domain-containing protein 19
3swp_B	1e-46	2	120	68	173	NAC domain-containing protein 19
3swp_C	1e-46	2	120	68	173	NAC domain-containing protein 19
3swp_D	1e-46	2	120	68	173	NAC domain-containing protein 19
4dul_A	1e-46	2	120	65	170	NAC domain-containing protein 19
4dul_B	1e-46	2	120	65	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g022280.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB049071	0.0	AB049071.1 Arabidopsis thaliana AtNAC2 mRNA, complete cds.
GenBank	BT004079	0.0	BT004079.1 Arabidopsis thaliana clone RAFL15-22-L08 (R20756) putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds.
GenBank	BT005044	0.0	BT005044.1 Arabidopsis thaliana clone U20756 putative jasmonic acid regulatory protein (At3g15510) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010465520.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	0.0	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A178VP09	0.0	A0A178VP09_ARATH; NARS1
STRING	XP_010465520.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-168	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]