PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g018880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 260aa    MW: 29064.9 Da    PI: 8.0513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g018880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-162875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEde+lv  +k+ G g+W++ +++ g+ R++k+c++rw +yl
   Csa19g018880.1 28 RGPWTVEEDEILVSFIKKEGEGRWRSLPKKAGLLRCGKSCRLRWMNYL 75
                     89******************************99************97 PP
2Myb_DNA-binding49.21.2e-1582126248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g  T +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   Csa19g018880.1  82 GGITSDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 126
                      56699****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-221978IPR009057Homeodomain-like
PROSITE profilePS5129416.4642375IPR017930Myb domain
SuperFamilySSF466893.23E-2924122IPR009057Homeodomain-like
SMARTSM007172.4E-132777IPR001005SANT/Myb domain
PfamPF002491.2E-142875IPR001005SANT/Myb domain
CDDcd001672.50E-113075No hitNo description
PROSITE profilePS5129424.08776130IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2479130IPR009057Homeodomain-like
SMARTSM007171.1E-1480128IPR001005SANT/Myb domain
PfamPF002494.1E-1483126IPR001005SANT/Myb domain
CDDcd001671.19E-1185126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MMLSSCGGKK PVLSKKTTPC CTKMGMKRGP WTVEEDEILV SFIKKEGEGR WRSLPKKAGL  60
LRCGKSCRLR WMNYLRPSVK RGGITSDEED LILRLHRLLG NRWSLIAGRI PGRTDNEIKN  120
YWNTHLRKKL LRQGIDPQTH KPLDVNNIHK PEEEEVSAGL NPLEPNSSSH TNTTVNSGIG  180
TSNKNSINVF GGEGNYEDFG FCYDDKFSSF LNSLINDDDD PFGNMIPISQ PLQMDDCTEE  240
IVGASSSLGN DQIDKKIYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27281307108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g018880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195870.0AY519587.1 Arabidopsis thaliana MYB transcription factor (At3g13540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487115.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388501e-156MYB5_ARATH; Transcription repressor MYB5
TrEMBLR0G7271e-160R0G727_9BRAS; Uncharacterized protein
STRINGXP_010487115.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-152myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]