PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g017110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 303aa    MW: 34884.9 Da    PI: 8.1964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g017110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1561.6e-48241522128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv +yL kkv  kk  +++e+++++diyk++PwdLp + +++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s 
  Csa19g017110.1  24 LPGFRFHPTDEELVGYYLSKKVLLKKpSKIDEIVSQIDIYKFDPWDLP-SSRNTEKENYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSD 117
                     59*******************887764788888***************.45567899*************************************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++glkktLv+y g+a kg+ktdW+mhe+rl
  Csa19g017110.1 118 gpNKTVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 152
                     888889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-5021187IPR003441NAC domain
PROSITE profilePS5100551.21323187IPR003441NAC domain
PfamPF023655.9E-2525152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEKMMGLRDN ISESKEDEEE VVKLPGFRFH PTDEELVGYY LSKKVLLKKP SKIDEIVSQI  60
DIYKFDPWDL PSSRNTEKEN YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DKPVYSDGPN  120
KTVIGLKKTL VYYLGSAGKG SKTDWMMHEF RLPTANDTIP GGPTHSNPTP TSALQAEVWT  180
LCRIFKRNVS SRKYTSDWRE LANGKRVKPQ QSNYQEAYIN FGDNESSSST NVIKGSYERS  240
AFQLHQTHHQ HQHHQDQPIP MNTTQVDSLQ QFSNDNIDYE SYENWDELRS VVEFAFPPSS  300
FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4351871168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g017110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266451e-107AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026861e-107CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487019.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK556e-74NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLR0HIW50.0R0HIW5_9BRAS; Uncharacterized protein
STRINGXP_010487019.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-162NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]