PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g016940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 297aa MW: 33589 Da PI: 7.6252 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 4e-18 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G ++W+++++ g+ R++k+c++rw +yl Csa19g016940.1 24 RGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.1e-17 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ +eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ Csa19g016940.1 77 RGSFNEEEEQIIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.653 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.68E-29 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.73E-11 | 27 | 71 | No hit | No description |
PROSITE profile | PS51294 | 26.606 | 72 | 126 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 75 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-16 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-11 | 79 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MREKWEMKRD DMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG 60 KSCRLRWINY LRPDLKRGSF NEEEEQIIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS 120 CIKKKLLSQG LDPSTHNLMP SHKRSSSSSF SNNNISKSRK TTSIMKNPTD LDQTTTAFSI 180 TNINPPTTTK PNRLKSPVLT LIPSQTMIPT NDTMSSLLED ENMIPNWSNV DEMAIHHEAP 240 MLSGDKSVVG VDDDDLNMDV LFSTPSSSAF DPDFASIFSS AMSIDFNPLD DLGWTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 24 | 126 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g016940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY039554 | 0.0 | AY039554.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds. | |||
GenBank | AY102155 | 0.0 | AY102155.1 Arabidopsis thaliana AT3g12720/MBK21_8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486997.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | D7L0J7 | 0.0 | D7L0J7_ARALL; Uncharacterized protein | ||||
STRING | XP_010486997.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7955 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-165 | myb domain protein 67 |