PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g015730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 270aa    MW: 30297.5 Da    PI: 7.5458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g015730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.97.2e-3234144199
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae++               +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F+
  Csa19g015730.1  34 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnnggggddVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQ 128
                     99***************************9999988775556799************************************************** PP

                     E-SS.SEE..EEEEE-S CS
              B3  84 ldgr.sefelvvkvfrk 99 
                     ++ r +  +l+++++r+
  Csa19g015730.1 129 RH-RfDLHRLFIGWRRR 144
                     65.44788889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-4024151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-3032146IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-2833135No hitNo description
SMARTSM010193.0E-2434145IPR003340B3 DNA binding domain
PROSITE profilePS5086313.25334145IPR003340B3 DNA binding domain
PfamPF023624.0E-2934144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSVNHNYHNT LSLQQQQHMH HQNDVAVAQR ESLFEKSLTP SDVGKLNRLV IPKQHAEKYF  60
PLNNNGGGGD DVATTEKGML LSFEDESGKC WKFRYSYWNS SQSYVLTKGW SRYVKDKHLD  120
AGDVVFFQRH RFDLHRLFIG WRRRGEVSSS PAVSVVSQEA LVNTTAYWSG LTTPYRQVHA  180
STTYPNIHHE YSHYGAVADQ AQSTSTAVAG SSRTVRLFGV NLECHGDAVE PPARTDAYNG  240
QHIYYYSTPH PMNLSFAGEA LEQVGDGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-50271471116B3 domain-containing transcription factor NGA1
5os9_B2e-50271471116B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g015730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4410760.0AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene).
GenBankAK1752810.0AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486825.10.0PREDICTED: B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-172Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLD7LAP41e-174D7LAP4_ARALL; Uncharacterized protein
STRINGXP_010486825.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-169B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]