PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g015540.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 440aa MW: 48504.2 Da PI: 4.8103

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g015540.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.6e-08	5	30	20	46
TTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46 ++ W+ a++++ gRt++++k++w++ Csa19g015540.1 5 VSRKWAQMAEHLP-GRTDNEIKNYWNT 30 5678*******.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.23	1	36	IPR017930	Myb domain
CDD	cd00167	4.45E-6	2	30	No hit	No description
Pfam	PF00249	6.3E-6	3	30	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-12	4	33	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.94E-6	6	35	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MAEHVSRKWA QMAEHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEIHVE DLQWSEEDTK 60 SNIIRVDRRR RQDFLQLGNS KANLLFDDLS FAASLLPAAS DLSDLVACNM LGTGASSSWY 120 ESYMPPILPS PKQLWDSGSR FPMCSSNIKH EVQSPEYFQD TASQKNPRSF SISPCYVDHP 180 PYGNQHSSDM MMILDSHTLT DGMLPTSKPS FGAVKLELPS FQYSETSAFD QWKATPSPPH 240 SDLLDSVDAY IQSPPPSEIE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL LSSSPEKSFS 300 STTCTTDATQ NVPRSQIKPG ELENFQMNLT RSEISIPSQL SAGGISSGNF VKTEEVDQVW 360 EPKRVDMTRP DVLLASSWLD QGCYGIVRDT SSMSDALALL LGGDDIGNSY VTVGSSSGQA 420 PRGGVGSCGW TNMPPVWSL*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MAEHVSRKWA QMAEHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEIHVE DLQWSEEDTK  60
SNIIRVDRRR RQDFLQLGNS KANLLFDDLS FAASLLPAAS DLSDLVACNM LGTGASSSWY  120
ESYMPPILPS PKQLWDSGSR FPMCSSNIKH EVQSPEYFQD TASQKNPRSF SISPCYVDHP  180
PYGNQHSSDM MMILDSHTLT DGMLPTSKPS FGAVKLELPS FQYSETSAFD QWKATPSPPH  240
SDLLDSVDAY IQSPPPSEIE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL LSSSPEKSFS  300
STTCTTDATQ NVPRSQIKPG ELENFQMNLT RSEISIPSQL SAGGISSGNF VKTEEVDQVW  360
EPKRVDMTRP DVLLASSWLD QGCYGIVRDT SSMSDALALL LGGDDIGNSY VTVGSSSGQA  420
PRGGVGSCGW TNMPPVWSL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Together with MYB33, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269\|PubMed:11743113, ECO:0000269\|PubMed:15722475, ECO:0000269\|PubMed:20699403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g015540.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:20699403, PubMed:17916625, PubMed:15226253). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Slightly induced by ethylene and salicylic acid (PubMed:16463103). {ECO:0000269\|PubMed:15226253, ECO:0000269\|PubMed:15722475, ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:17916625, ECO:0000269\|PubMed:20699403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519585	0.0	AY519585.1 Arabidopsis thaliana MYB transcription factor (At3g11440) mRNA, complete cds.
GenBank	BT003940	0.0	BT003940.1 Arabidopsis thaliana clone RAFL15-06-P04 (R20731) putative Myb DNA-binding protein (At3g11440) mRNA, complete cds.
GenBank	BT005120	0.0	BT005120.1 Arabidopsis thaliana clone U20731 putative Myb DNA-binding protein (At3g11440) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495790.1	0.0	PREDICTED: transcription factor GAMYB-like
Swissprot	Q9FR97	0.0	MYB65_ARATH; Transcription factor MYB65
TrEMBL	R0G454	0.0	R0G454_9BRAS; Transcription factor
STRING	XP_010495790.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3802	28	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	0.0	myb domain protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Allen RS, et al. Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(41): p. 16371-6 [PMID:17916625] Li J,Reichel M,Millar AA Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis. PLoS Genet., 2014. 10(3): p. e1004232 [PMID:24626050] Li Y,Alonso-Peral M,Wong G,Wang MB,Millar AA Ubiquitous miR159 repression of MYB33/65 in Arabidopsis rosettes is robust and is not perturbed by a wide range of stresses. BMC Plant Biol., 2016. 16(1): p. 179 [PMID:27542984] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Zheng Z, et al. Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy. Plant Physiol., 2017. 174(3): p. 1764-1778 [PMID:28515145] Xue T,Liu Z,Dai X,Xiang F Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101. Plant Sci., 2017. 262: p. 182-189 [PMID:28716415] Kim MH, et al. Poplar MYB transcription factor PtrMYB012 and its Arabidopsis AtGAMYB orthologs are differentially repressed by the Arabidopsis miR159 family. Tree Physiol., 2018. 38(6): p. 801-812 [PMID:29301041]