PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g015140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 254aa MW: 28792.4 Da PI: 6.5404 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.9 | 3e-14 | 28 | 108 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Liea ++ +l+rg+l++++W+ev++++ + g ++ +qCk++++ l+k+yk +k+ ++ + +fd+l+ Csa19g015140.1 28 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVnasHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------AWCFFDRLD 108 *************************************8655666788*******************998886.......488888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.8E-25 | 26 | 109 | No hit | No description |
SMART | SM00595 | 0.0024 | 35 | 115 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
METTPETHPK PHNQSRSNRL PAGREDWWSE DATATLIEAW GDRYVNLNRG NLRQNDWKEV 60 ADAVNASHGN GRPKTDVQCK NRIDTLKKKY KTEKAKPSSA WCFFDRLDFL IGPVVKKPSG 120 GVVKSALMNP NLNPAGSKST GSSLDDDDDD DDDEDDDDAG DWGFVVRKHR RVEDVDLSEG 180 SAFRELARSI LKLGEAFERI EGKKQRMMIE LEKQRMEVAK DLELQRMNML MEMQLELEKS 240 KLGKRRACSG KKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g015140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254608 | 0.0 | AC254608.1 Capsella rubella clone CAP16-D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486753.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | R0G6K6 | 1e-152 | R0G6K6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010486753.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-122 | sequence-specific DNA binding transcription factors |