PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g011430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 374aa    MW: 40882.1 Da    PI: 6.0491
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g011430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  Csa19g011430.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                    6*****************************65677777776 PP
2zf-B_box24.84.7e-084695440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.............Htvv 40
                     +C++++ ++++  C + ++ lC++C  ++H++             H+++
  Csa19g011430.1 46 LICERCNAQPATVRCVEERVSLCQNCDWSGHNNnnssssassspqqHKRQ 95
                    68*****************************8877777777777777765 PP
3CCT60.46.1e-21316359144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  Csa19g011430.1 316 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 359
                     99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
CDDcd000215.30E-8447No hitNo description
SMARTSM003362.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8734397IPR000315B-box-type zinc finger
CDDcd000211.01E-54776No hitNo description
SMARTSM003361.64897IPR000315B-box-type zinc finger
PfamPF062031.0E-15316358IPR010402CCT domain
PROSITE profilePS5101715.338316358IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLICER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN SSSSASSSPQ QHKRQTISCY SGCPSSSELA SIWSFCLDLA  120
GQSICEQELG MMNIDDNNNA PTDKNCNEDN KKDVLVGSST VPETSSAAPG NSSFAKKDVG  180
VCEDDFYGNL GMDEVDLALE NYEELFGVAF NPSEELFGHG GIDSLFQKHQ TATEGGNHVQ  240
PADSNDSFMS SKTEPIICFA SKPAHSNISF SGVTGESSAG DFQECGASSS MQLSGEPPWY  300
PPTSQDNNAC SHSVTRNNAV MRYKEKKKAR KFDKRVRYAS RKARADVRRR VKGRFVKAGE  360
AYDYDPLTPT RSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g011430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3169340.0AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23.
GenBankBT0294900.0BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486334.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLR0HZV40.0R0HZV4_9BRAS; Uncharacterized protein
STRINGXP_010486334.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9