PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g011070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 464aa MW: 50871 Da PI: 7.077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 2.9e-09 | 275 | 322 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa19g011070.1 275 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 322 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.41E-10 | 269 | 326 | No hit | No description |
SuperFamily | SSF47459 | 5.5E-17 | 269 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 271 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-17 | 271 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-6 | 275 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 277 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MENELFMNAG VSQPPVLMTS PSSSSAMLNW VSSSTQPVDP SLSHNLSRDC LFWEKSTEQS 60 IFDSALSSLV SSPNSNFSGG GGVAHGDNFI IRELIGKLGN IGEIYGAPAS NGNVSASCYA 120 TPMRSSPPPR HMMVTKPPTP LAEFSGDTGF AERAARFSCF GSRSFNGRTN PPFPINNNNV 180 PVAANEKMPR VSSTPALKPL AGESSGEISR KRKTKSKQNS PSTASPSKEV EEKEVSDPKR 240 SKKTEANEDK TKSVDDDPYK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG 300 CNKVTGKALM LDEIINYVQS LQRQVEFLSM KLSSVNTRLD FNMDAFMSKD IFPSSNNLMH 360 HQVLQLDSSA ETLLSDHHHN TILQLNPKIS SNNTMTPLES SETRSFVSHL PTLAHFTDSI 420 SQYSTFSEDD LHSIIHMGFA QNLIHELNPG PSNQVPSNMK AEL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 213 | SRKRKT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g011070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175369 | 0.0 | AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17. | |||
GenBank | AK175496 | 0.0 | AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09. | |||
GenBank | BT026497 | 0.0 | BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486282.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
Swissprot | Q9SRT2 | 0.0 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | R0G587 | 0.0 | R0G587_9BRAS; Uncharacterized protein | ||||
STRING | XP_010486282.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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