PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g008200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YA | ||||||||
Protein Properties | Length: 295aa MW: 32077.9 Da PI: 10.1848 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 93.3 | 2.9e-29 | 137 | 196 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ +kkl+++srkpy+h+SRh hAlrRpRgsgGrF Csa19g008200.1 137 GTIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSIRSRKPYMHHSRHLHALRRPRGSGGRF 196 689*********************9999*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.8E-30 | 134 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.83 | 135 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.4E-23 | 138 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-21 | 138 | 160 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.6E-21 | 173 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAMQTVREGL FSAPQTSWWN AFGSQAPLAH ESLAGDSDSF AGVKVGSAGE TEQSGDKQNN 60 SVTHLAFSLG DVKSSRVVSK SHGSVFSMQS PSLELGFTHP SIYAKYPYGE QQYYGVVSAY 120 GSQSRVMLPL NMETEDGTIY VNSKQYHGII RRRQSRAKAA AVLDQKKLSI RSRKPYMHHS 180 RHLHALRRPR GSGGRFLNTK SQNLEKSGNN AKKADGNKQV QSQPKPQQSN SQNSEVHPES 240 GIMNLSNGLN VTGSEVTSMN YFLSSPVHSL GGMVMPSKWI AAAAMDNSCC NFKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 5e-15 | 136 | 197 | 2 | 60 | HAPB protein |
4g92_A | 5e-15 | 136 | 197 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g008200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT026062 | 0.0 | BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486041.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_010486042.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1 | ||||
Refseq | XP_019096194.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X2 | ||||
Swissprot | Q9M9X4 | 0.0 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | R0HMJ6 | 0.0 | R0HMJ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010486041.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 0.0 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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