PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g007990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 197aa MW: 22290.5 Da PI: 7.386 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38 | 2.8e-12 | 87 | 180 | 2 | 80 |
EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesg...rsWevkliyrkksgryvltkGW.keFvkangLkeg 77 +k+lt+sdv+++ rl +pk+ a+eh + +++ ++t+ d++ r+ +k + + g+yvl ++W k+Fv+ ++Lk+g Csa19g007990.1 87 KKTLTTSDVGSQTRLLIPKEPANEHilkylteeeiklvedE--GHQGLKITVFDSKDrttRQLCFKR--WTSAGSYVLNNNWnKDFVQRKKLKAG 177 699**********************8877666666555321..235555666555555556666666..*************557********** PP -EE CS B3 78 Dfv 80 +++ Csa19g007990.1 178 ETI 180 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-15 | 82 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.06E-16 | 84 | 196 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-16 | 86 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-9 | 88 | 180 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MNTQDDTPPS SPTTSRLLDL FPCESVVVLD LFPCQGGEFA CRVPPSVTRN ETGVSLAYFR 60 NMPGVERDIM NATELTLSIE ADIWKIKKTL TTSDVGSQTR LLIPKEPANE HILKYLTEEE 120 IKLVEDEGHQ GLKITVFDSK DRTTRQLCFK RWTSAGSYVL NNNWNKDFVQ RKKLKAGETI 180 GLFWNPYASR LHLRVL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g007990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489677.1 | 1e-145 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | R0I8N3 | 2e-93 | R0I8N3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010489677.1 | 1e-144 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 4e-25 | B3 family protein |