PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g004650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 267aa MW: 28412.2 Da PI: 7.6972 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.5 | 2.5e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q Csa19g004650.1 4 SCNGCRVLRKGCSEDCSIRPCLswiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQD 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e+++ +e Csa19g004650.1 99 AVEAVMKGE 107 *99988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 1.5E-101 | 1 | 266 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.143 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-23 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEDCS IRPCLSWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVMKGEPIT EIATDAATIG 120 QGPPLKSYDI RHNSKDDNSA AAAATGSTDL KRGKPRRAKR IAALEKQAES EGKSGGGEAS 180 HDSSLSHQSE VVAAHEGESK ESESDASEVL AFSPPAVQGS GDIKLDLTLG LEPVSRAYDV 240 APVKKRRIGV FATCQKESTC KTELML* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g004650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086061 | 0.0 | AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485564.1 | 0.0 | PREDICTED: LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-175 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | R0I6Q7 | 0.0 | R0I6Q7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010485564.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7721 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-166 | LOB domain-containing protein 41 |