PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g003030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 711aa    MW: 78875.1 Da    PI: 5.695
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g003030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.6e-061456440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    r C+++ +   + +Ce ++ +lC++C    H        H++v
  Csa19g003030.1 14 RACDTCRSAACTVYCEADSAYLCNTCDARVHAAnrvasrHERV 56
                    57******99******************999556677777766 PP
2zf-B_box31.53.6e-1056101342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      r+C+ +e+ ++ + C+ +   lC +C  e+H+       H++vp+
  Csa19g003030.1  56 VRVCQSCESAPAAFLCKADAASLCTTCDAEIHSAnplarrHQRVPI 101
                     689*****************************66899999**9997 PP
3zf-B_box18.15.6e-06197239440
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                     r C+++ +   + +Ce ++ +lC++C    H        H++v
  Csa19g003030.1 197 RACDTCRSAACTVYCEADSAYLCNTCDARVHAAnrvasrHERV 239
                     57******99******************999556677777766 PP
4zf-B_box31.53.6e-10239284342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      r+C+ +e+ ++ + C+ +   lC +C  e+H+       H++vp+
  Csa19g003030.1 239 VRVCQSCESAPAAFLCKADAASLCTTCDAEIHSAnplarrHQRVPI 284
                     689*****************************66899999**9997 PP
5CCT67.24.6e-23460502143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     Rea++lRY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+
  Csa19g003030.1 460 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 502
                     9****************************************98 PP
6CCT67.24.6e-23641683143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     Rea++lRY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+
  Csa19g003030.1 641 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 683
                     9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6941158IPR000315B-box-type zinc finger
SMARTSM003362.0E-81158IPR000315B-box-type zinc finger
CDDcd000212.79E-71458No hitNo description
PROSITE profilePS5011911.73254101IPR000315B-box-type zinc finger
PfamPF006431.3E-756101IPR000315B-box-type zinc finger
CDDcd000211.05E-757101No hitNo description
SMARTSM003361.3E-1159101IPR000315B-box-type zinc finger
PROSITE profilePS5011910.694194241IPR000315B-box-type zinc finger
SMARTSM003362.0E-8194241IPR000315B-box-type zinc finger
CDDcd000212.79E-7197241No hitNo description
PROSITE profilePS5011911.732237284IPR000315B-box-type zinc finger
PfamPF006431.3E-7239284IPR000315B-box-type zinc finger
CDDcd000211.05E-7240284No hitNo description
SMARTSM003361.3E-11242284IPR000315B-box-type zinc finger
PfamPF062038.1E-17460502IPR010402CCT domain
PROSITE profilePS5101716.44460502IPR010402CCT domain
PfamPF062038.1E-17641683IPR010402CCT domain
PROSITE profilePS5101716.44641683IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MLKEESNESG NWARACDTCR SAACTVYCEA DSAYLCNTCD ARVHAANRVA SRHERVRVCQ  60
SCESAPAAFL CKADAASLCT TCDAEIHSAN PLARRHQRVP ILPLSANSCS SMAPSETDAD  120
NDEDDIEVAS WLLPNPGKNS GTQNNGFLFG VEYLDLVDYS SSMDNQFDDH QYSQYQRSFG  180
GDGVVPLQSN ESGNWARACD TCRSAACTVY CEADSAYLCN TCDARVHAAN RVASRHERVR  240
VCQSCESAPA AFLCKADAAS LCTTCDAEIH SANPLARRHQ RVPILPLSAN SCSSMAPSET  300
DADNDEDDRE VASWLLPNPG KNSGTQNNGF LFGVEYLDLV DYSSSMDNQF DDHQYSQYQR  360
SFGGDGVVPL QVEESTSHLQ QSQHNFHLGI NYGCSSGAHY NNSLKDLNYS ASVSSMDISV  420
VPESTASDIT VQHPRTTKET IDQLSGPPTQ MVQQLTPMER EARVLRYREK KKTRKFDKTI  480
RYASRKAYAE IRPRIKGRFA KRIEIEADAE EIFSTSLMSE TGYGIICITX FDDHQYSQYQ  540
RSFGGDGVVP LQVEESTNHL QQSQHNFHLG INYGCSTGAH YNNSLKDLNY SASVSSMDIS  600
VVPESPASDI TVQHPRTTKE TIDQLSGPPT QMVQQLTPME REARVLRYRE KKKTRKFDKT  660
IRYASRKAYA EIRPRIKGRF AKRIEIEADA EEIFSTSLMS ETGYGIVPSF *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g003030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3701490.0AF370149.1 Arabidopsis thaliana putative flowering-time gene CONSTANS protein COL2 (At3g02380) mRNA, complete cds.
GenBankATHCOL2A0.0L81120.1 Arabidopsis thaliana Landsberg erecta COL2 (CONSTANS) mRNA, complete cds.
GenBankAY0590920.0AY059092.1 Arabidopsis thaliana putative flowering-time gene CONSTANS protein COL2 (At3g02380) mRNA, complete cds.
GenBankAY0887790.0AY088779.1 Arabidopsis thaliana clone 949 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485482.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965020.0COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLI3RT180.0I3RT18_ARALL; Putative flowering-time constans protein
STRINGXP_010485482.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.10.0CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]