PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g042220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 335aa MW: 36645.6 Da PI: 6.0524 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 246 | 280 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l Csa18g042220.1 246 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 280 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.5E-101 | 1 | 334 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.991 | 240 | 276 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.4E-16 | 240 | 294 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.28E-14 | 242 | 303 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.5E-15 | 244 | 278 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.01E-14 | 245 | 293 | No hit | No description |
Pfam | PF00320 | 1.3E-16 | 246 | 280 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 246 | 271 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEQAALKSSI RKEMAFKTTP PVFEDFLAVT TATAQNADDF SVDDLLDLSN DDVFADDDTV 60 LLDPHEQQDM ARHELNDDAD ALPRRSNDFP GCDDFGSELS VPADDLANLE WLSHFVEDSF 120 TEYSGPNLTG TPTEKPAWLT GDRKHPVTPA TEESCFKSPV PAKARSKRHR NGVKSWSLGS 180 SSSSGPSSSG STSSSSSSGP SSPWFSGSEL LEPMVTSERP PFPKKYKKRS AESAFCGQLQ 240 QPQRRCSHCG VQKTPQWRAG PMGAKTLCNA CGVRYKSGRL LPEYRPACSP TFSSELHSNH 300 HRKVMEMRRK KEPASDNDTG LNQLVQSPQA VPSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g042220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY136450 | 0.0 | AY136450.1 Arabidopsis thaliana GATA-binding transcription factor-like protein (At5g66320) mRNA, complete cds. | |||
GenBank | BT010367 | 0.0 | BT010367.1 Arabidopsis thaliana At5g66320 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484661.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 1e-177 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A178UHW1 | 1e-175 | A0A178UHW1_ARATH; GATA transcription factor | ||||
STRING | XP_010484661.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3698 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-165 | GATA transcription factor 5 |