PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g040580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 325aa MW: 34089.4 Da PI: 8.3863 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.4 | 5.5e-37 | 27 | 87 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s Csa18g040580.1 27 QQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTRGGTLRDIPVGGVSRKSSKRS 87 57899***************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-35 | 2 | 79 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.668 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MPSEFSESRR ISKIPHGGAT VATPVDQQEQ LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS 60 CRRYWTRGGT LRDIPVGGVS RKSSKRSRTC SSSAANTTVV GSRNFPLQAT PVLFPQSSTN 120 GGCTAAKGSA SSLYGGFTSL IHYNGAVSRN GPDGGFNGPD GFSLGLGHGP YFDDVRFGQG 180 ITVWPFSTGA TDAATTTSHV AQIPATWQFE GPESKSSTNG GCTAAKGSAS SLYGGFTSLI 240 HYNGAVSRNG PDGGFNGPDG FSLGLGHGPY FDDVRFGQGI TVWPFSTGAT DAATTTSHVA 300 QIPATWQFEG PESKVGFASG DYLA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00593 | DAP | Transfer from AT5G66940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g040580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026640 | 0.0 | AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10. | |||
GenBank | AB493817 | 0.0 | AB493817.1 Arabidopsis thaliana At5g66940 gene for hypothetical protein, partial cds, clone: RAAt5g66940. | |||
GenBank | BT029523 | 0.0 | BT029523.1 Arabidopsis thaliana At5g66940 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484567.1 | 1e-149 | PREDICTED: dof zinc finger protein DOF5.8-like | ||||
Swissprot | Q9FGD6 | 1e-124 | DOF58_ARATH; Dof zinc finger protein DOF5.8 | ||||
TrEMBL | V4KJ14 | 1e-123 | V4KJ14_EUTSA; Uncharacterized protein | ||||
STRING | XP_010484567.1 | 1e-148 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 1e-107 | Dof family protein |
Publications ? help Back to Top | |||
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