PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g040580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 325aa    MW: 34089.4 Da    PI: 8.3863
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g040580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.45.5e-372787262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s
  Csa18g040580.1 27 QQEQLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTRGGTLRDIPVGGVSRKSSKRS 87
                    57899***************************************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-35279IPR003851Zinc finger, Dof-type
PfamPF027012.7E-322985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6683185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPSEFSESRR ISKIPHGGAT VATPVDQQEQ LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS  60
CRRYWTRGGT LRDIPVGGVS RKSSKRSRTC SSSAANTTVV GSRNFPLQAT PVLFPQSSTN  120
GGCTAAKGSA SSLYGGFTSL IHYNGAVSRN GPDGGFNGPD GFSLGLGHGP YFDDVRFGQG  180
ITVWPFSTGA TDAATTTSHV AQIPATWQFE GPESKSSTNG GCTAAKGSAS SLYGGFTSLI  240
HYNGAVSRNG PDGGFNGPDG FSLGLGHGPY FDDVRFGQGI TVWPFSTGAT DAATTTSHVA  300
QIPATWQFEG PESKVGFASG DYLA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00593DAPTransfer from AT5G66940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g040580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266400.0AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankAB4938170.0AB493817.1 Arabidopsis thaliana At5g66940 gene for hypothetical protein, partial cds, clone: RAAt5g66940.
GenBankBT0295230.0BT029523.1 Arabidopsis thaliana At5g66940 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484567.11e-149PREDICTED: dof zinc finger protein DOF5.8-like
SwissprotQ9FGD61e-124DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBLV4KJ141e-123V4KJ14_EUTSA; Uncharacterized protein
STRINGXP_010484567.11e-148(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.11e-107Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]