PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa18g040520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18646.9 Da PI: 9.3152 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 103 | 153 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr+++ +g W+AeI+dp + r +lg f tae+Aa+a+++a+ ++ g Csa18g040520.1 103 KKYKGVRRKP-SGNWAAEIWDP-----SmkERRWLGAFPTAEMAARAYDEAAAEIVG 153 59*****888.7*********9.....445999*******************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.04E-14 | 103 | 165 | No hit | No description |
SMART | SM00380 | 1.1E-26 | 104 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-10 | 104 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-22 | 104 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-16 | 104 | 155 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.495 | 104 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MNSSKTDCSE NVLSNDQNEN VTAVASPPPP SSSYLTRDQE HGIMVSALRQ VISNSGGHTS 60 SSNLIVAEAA LPPPDAGPCP LCGVTGCYGC TFQRPRGEMR KEKKYKGVRR KPSGNWAAEI 120 WDPSMKERRW LGAFPTAEMA ARAYDEAAAE IVGRTSARRG TTNGEGFKRR RS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa18g040520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484562.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor ERF122-like | ||||
Swissprot | Q38Q40 | 5e-81 | EF122_ARATH; Ethylene-responsive transcription factor ERF122 | ||||
TrEMBL | R0F066 | 9e-93 | R0F066_9BRAS; Uncharacterized protein | ||||
STRING | XP_010484562.1 | 1e-125 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67000.1 | 8e-70 | ERF family protein |