PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa18g040490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26718.3 Da PI: 10.1596 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 142 | 182 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Csa18g040490.1 142 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 182 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.434 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-14 | 134 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 137 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-14 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-6 | 143 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-5 | 156 | 187 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MDSDIMNMMM HQMEKLPHEF CNPNNSSFFS PDHNNNNTYP FLFNSSHHHS DHSLTNEPGF 60 RYGSAGLLTN PSSLSPNTAY SSVLLDKRNN SNNNNNSANM AAMREMIFRI AVMQPIHIDP 120 EAVKPPKRRN VRISKDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS MLDEAIHYVK 180 FLKKQVQSLE EHAVVGGGGG GGPGRVLIGA GGMTAASGGG GGGGVVMKGC GAMGTHQMVG 240 NAQILR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa18g040490.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB020742 | 0.0 | AB020742.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1. | |||
GenBank | AF488618 | 0.0 | AF488618.1 Arabidopsis thaliana clone bHLH088 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AK228927 | 0.0 | AK228927.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-24-D23. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484558.1 | 0.0 | PREDICTED: transcription factor HEC1 isoform X1 | ||||
Swissprot | Q9FHA7 | 1e-115 | HEC1_ARATH; Transcription factor HEC1 | ||||
TrEMBL | R0GQL0 | 1e-113 | R0GQL0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010484559.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1559 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67060.1 | 1e-102 | bHLH family protein |