 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa18g040030.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
GRAS |
| Protein Properties |
Length: 433aa MW: 48594.4 Da PI: 4.9875 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa18g040030.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 309 | 1.1e-94 | 31 | 422 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPil 91
++lLl+cA+a++s+d++laq++++ l++laspdgd++qRla+ f++AL +r a++ + + l++ +t+ + + +++++ +l f+++sP++
Csa18g040030.1 31 EQLLLHCANAIESNDATLAQQIIWVLNNLASPDGDSTQRLAFSFLRALMSRAASKIPAFA-FLSVAATAASFsrkTLHRFSVIELaeFVDLSPWH 124
79****************************************************777654.44444444344112444445555589******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefn 179
+f++++aN aIl+aveg + +Hi+D+++++++Q p+L++++a++ ++ p l++T+++s +++ ++ee+g++L +fA++ ++ +ef+
Csa18g040030.1 125 RFGFIAANAAILDAVEGYSSIHIVDLSLTHCMQMPTLIDSMANKLhkQPLPLLKLTVIASDDEShppplLGISYEELGSKLVNFATTRNIAMEFR 219
******************************************998667778********988778888888999********************* PP
GRAS 180 vl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
++ +++ l++l +e+Lr +p +Eal+Vn++++lh++++e+++++ +r+ +Lk +++l+P++v++++++ad +s+++ r+ + +y++ +
Csa18g040030.1 220 IIsssYSDGLSSL-IEQLRNDPfvfNEALVVNCHMMLHYIPEETLTSNPTRSVFLKELRDLNPTIVTLIDEDADFTSTNLISRLRSLYNYMWIPY 313
*966555566666.9******************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgsl 358
d+ ++ r se+r+++E+ ++++i nv+a+egaer+er e +++W er++ea F v ++e +a++ak++l++++ ++g++ + ++ + +
Csa18g040030.1 314 DTADMFWTRGSEQRQWYEAD-VSWKIDNVIAKEGAERVERLEPKSRWFERMREAKFAGVGFGEVVATEAKTMLEEHAtGWGMKRDvdedDDVERF 407
********************.9*******************************************************999987664433336789 PP
GRAS 359 vlgWkdrpLvsvSaW 373
vl+Wk++++v++SaW
Csa18g040030.1 408 VLTWKGHSVVFASAW 422
9************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 433 aa
Download sequence Send
to blast |
MNTTRILNPT RPLWPGFSSS KSLCADANCM EQLLLHCANA IESNDATLAQ QIIWVLNNLA 60
SPDGDSTQRL AFSFLRALMS RAASKIPAFA FLSVAATAAS FSRKTLHRFS VIELAEFVDL 120
SPWHRFGFIA ANAAILDAVE GYSSIHIVDL SLTHCMQMPT LIDSMANKLH KQPLPLLKLT 180
VIASDDESHP PPLLGISYEE LGSKLVNFAT TRNIAMEFRI ISSSYSDGLS SLIEQLRNDP 240
FVFNEALVVN CHMMLHYIPE ETLTSNPTRS VFLKELRDLN PTIVTLIDED ADFTSTNLIS 300
RLRSLYNYMW IPYDTADMFW TRGSEQRQWY EADVSWKIDN VIAKEGAERV ERLEPKSRWF 360
ERMREAKFAG VGFGEVVATE AKTMLEEHAT GWGMKRDVDE DDDVERFVLT WKGHSVVFAS 420
AWAPINGVAD LT*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB007645 | 0.0 | AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
