PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g039460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 40432.1 Da PI: 4.8802 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.3e-12 | 187 | 230 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L Csa18g039460.1 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 230 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.643 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-16 | 184 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-10 | 187 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.78E-5 | 188 | 230 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 188 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MELSTQMNVY EELLVPTKQE TTDNNINSLS FNGGFDHHHH HHHHQFFPNG YSIDYLCFNN 60 EEEDENTLIY PSSFMDLISQ PPPLLLHQPP PLQPPSPPLS SSAAATFDYP FLEALQEIID 120 SSSSSPPLIL QNGHQEDNNN NFHNPTSSYP SPLMESDQSK SFSVGYCGGE TNKKKSKKLE 180 GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDAIDYMKEL LDKINKLQDE 240 EQELGNSNNS HHSKLFGDLK DLNTNEPMVR NSPKFEIDRR DEDTRVDICC SPKPGLLLST 300 VNTLETLGME IEQCVISCFS DFSLQASCSE GAEQRDFITS EDIKQALFRN AGYGGSCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
5gnj_B | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
5gnj_E | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
5gnj_F | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
5gnj_G | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
5gnj_I | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
5gnj_M | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
5gnj_N | 6e-13 | 182 | 260 | 5 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 194 | KKKSKKLEGQPSKNLMAERRRRK |
2 | 189 | 196 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g039460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085134 | 0.0 | AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484399.1 | 0.0 | PREDICTED: transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 0.0 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A178UDV4 | 0.0 | A0A178UDV4_ARATH; BHLH093 | ||||
STRING | XP_010484399.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 0.0 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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