PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa18g039300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 398aa MW: 44184 Da PI: 4.4681 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5.2e-19 | 72 | 125 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Csa18g039300.1 72 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.5 | 1.3e-41 | 71 | 163 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++dalk+++++L++++++L ++ke Csa18g039300.1 71 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRSRDSLQRDNDSLLGQIKE 163 69*************************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.0E-19 | 59 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.831 | 67 | 127 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-18 | 70 | 131 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-16 | 72 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.74E-19 | 72 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-20 | 74 | 134 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 98 | 107 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 107 | 123 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-16 | 127 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MKRSRGSSDS LAGFLPIRHS ATDKQISPRP TNTGFLYSGA GDYSQMFDAL DDDGSLDDMG 60 GVGHASSTAA EKKRRLSVEQ VKALEKNFEI DNKLEPERKV KLAQELGLQP RQVAIWFQNR 120 RARWKTKQLE RDYGVLKSNF DALKRSRDSL QRDNDSLLGQ IKELRAKLKV DGVNGVEEEN 180 GVIKAADANQ TVVMANNEVL ELNHRPPPPH IPTEAPAPTS ELAYEMFSIF PRTESFREDP 240 ADSSDSSAVL NEEYSPTTVE AAGAVAATTM GCFSQFVKME EHEDLFILEL NHRPPPPHIP 300 TEAPAPTSEL AYEMFSIFPR TESFREDPAD SSDSSAVLNE EYSPTTVEAA GAVAATTMDC 360 FSQFVKMEEH EDLFSGEEAC KLFADNEQWY CSDQWNS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 119 | 127 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa18g039300.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF325054 | 0.0 | AF325054.2 Arabidopsis thaliana AT5g65310 (AT5g65310/MNA5_4) mRNA, complete cds. | |||
GenBank | AY074293 | 0.0 | AY074293.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (At5g65310) mRNA, complete cds. | |||
GenBank | AY091340 | 0.0 | AY091340.1 Arabidopsis thaliana putative homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) (At5g65310) mRNA, complete cds. | |||
GenBank | X67033 | 0.0 | X67033.1 A.thaliana mRNA Athb-5. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484381.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-5-like isoform X1 | ||||
Swissprot | P46667 | 1e-166 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | R0GN08 | 1e-174 | R0GN08_9BRAS; Uncharacterized protein | ||||
STRING | XP_010484381.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12986 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65310.1 | 1e-144 | homeobox protein 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|