PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g039290.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 274aa MW: 30798.7 Da PI: 10.1376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g039290.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.4	6.9e-15	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++++P + +s+ ++ a+i+e +++Y+k+L+ Csa18g039290.1 85 QRMNHIAVERNRRRQMNHFLSVLKSMMPLS---HSQPNDQASIVEGTINYLKKLE 136 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-12	84	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.25	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-16	84	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.10E-12	84	140	No hit	No description
Pfam	PF00010	1.9E-12	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-9	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
METSLSYDIL DFLQNIVVSK SQQNSLSSSS YSATFSCSVT EQQSHSTQNL PSLRPGGGSS 60 DDYVQSPKRS RRTRSDKKIE DIQNQRMNHI AVERNRRRQM NHFLSVLKSM MPLSHSQPND 120 QASIVEGTIN YLKKLEQLLH SLEAQLKARK PNQSPNKFSN FFMFPQYSTA TTASSFSSTY 180 HHSKAVADVE VTMVERHANI KVLTKTQPRL LFKLINDFNS LGLSTLHLNL TTANEMSLFT 240 IGVKVEANSQ LTPSINEVAN AVHEVVRRIH KES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	96	RMNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g039290.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488625	3e-92	AF488625.1 Arabidopsis thaliana clone bHLH099 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AY070095	3e-92	AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBank	AY096704	3e-92	AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484378.1	0.0	PREDICTED: transcription factor bHLH99-like
Swissprot	Q9FKQ6	1e-117	BH099_ARATH; Transcription factor bHLH99
TrEMBL	R0F081	1e-127	R0F081_9BRAS; Uncharacterized protein
STRING	XP_010484378.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-112	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]